miRNA display CGI


Results 1 - 20 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23802 3' -61.4 NC_005261.1 + 60250 0.65 0.719975
Target:  5'- gCCGCGgcgggagcggcggCCgugaaGAgGCGC-CCGGGGuCCg -3'
miRNA:   3'- -GGCGUa------------GGa----CUgCGCGcGGCCCCuGG- -5'
23802 3' -61.4 NC_005261.1 + 33360 0.76 0.209576
Target:  5'- aCCGCcgCCgGGC-CGCGCCGGgcugcGGGCCg -3'
miRNA:   3'- -GGCGuaGGaCUGcGCGCGGCC-----CCUGG- -5'
23802 3' -61.4 NC_005261.1 + 30354 0.76 0.219649
Target:  5'- cUCGCGgcCCUGAaggccgGCGCGCCGGGcGCCg -3'
miRNA:   3'- -GGCGUa-GGACUg-----CGCGCGGCCCcUGG- -5'
23802 3' -61.4 NC_005261.1 + 29196 0.76 0.219649
Target:  5'- gCCGCGgcgcCCgcgcgGGCGCGCGaCUGGGGcCCg -3'
miRNA:   3'- -GGCGUa---GGa----CUGCGCGC-GGCCCCuGG- -5'
23802 3' -61.4 NC_005261.1 + 56033 0.76 0.219649
Target:  5'- aUCGCGcCCgUGACGCGCGCgagcgauguuCGGGGGCg -3'
miRNA:   3'- -GGCGUaGG-ACUGCGCGCG----------GCCCCUGg -5'
23802 3' -61.4 NC_005261.1 + 56314 0.75 0.225364
Target:  5'- cCCGCcugcuacugacgagCCUGGCGCGCGCCGaGG-CCg -3'
miRNA:   3'- -GGCGua------------GGACUGCGCGCGGCcCCuGG- -5'
23802 3' -61.4 NC_005261.1 + 97406 0.75 0.235532
Target:  5'- gCCGCGggCUUGGCggGCGCGCCGGGccuGCCc -3'
miRNA:   3'- -GGCGUa-GGACUG--CGCGCGGCCCc--UGG- -5'
23802 3' -61.4 NC_005261.1 + 97077 0.75 0.240481
Target:  5'- uCCGCGUCg-GAgGCGCcggcuggGCCGGGGGCg -3'
miRNA:   3'- -GGCGUAGgaCUgCGCG-------CGGCCCCUGg -5'
23802 3' -61.4 NC_005261.1 + 58276 0.75 0.241036
Target:  5'- gCCGCGcUCacggGGCcgGCGCGCCGGGGGgCg -3'
miRNA:   3'- -GGCGU-AGga--CUG--CGCGCGGCCCCUgG- -5'
23802 3' -61.4 NC_005261.1 + 103256 0.76 0.20469
Target:  5'- cCCGCGUCCgcGCacagccgcuccaGCGCGCCGGGuGCCg -3'
miRNA:   3'- -GGCGUAGGacUG------------CGCGCGGCCCcUGG- -5'
23802 3' -61.4 NC_005261.1 + 55407 0.76 0.199903
Target:  5'- aCUGCAUCUacGCGCGCGCCGGcuGGcGCCa -3'
miRNA:   3'- -GGCGUAGGacUGCGCGCGGCC--CC-UGG- -5'
23802 3' -61.4 NC_005261.1 + 70339 0.77 0.190621
Target:  5'- aCGCGUCga---GCGgGCCGGGGACCg -3'
miRNA:   3'- gGCGUAGgacugCGCgCGGCCCCUGG- -5'
23802 3' -61.4 NC_005261.1 + 78554 0.8 0.1058
Target:  5'- gCCGCgAUCCgcuCGCGCGCCG-GGACCg -3'
miRNA:   3'- -GGCG-UAGGacuGCGCGCGGCcCCUGG- -5'
23802 3' -61.4 NC_005261.1 + 21753 0.8 0.114052
Target:  5'- gCUGCG-CCUGgaGCGCGCGCCGGGcGAgCCg -3'
miRNA:   3'- -GGCGUaGGAC--UGCGCGCGGCCC-CU-GG- -5'
23802 3' -61.4 NC_005261.1 + 47704 0.78 0.153407
Target:  5'- gCCGCGUC--GGCG-GCGUCGGGGGCCu -3'
miRNA:   3'- -GGCGUAGgaCUGCgCGCGGCCCCUGG- -5'
23802 3' -61.4 NC_005261.1 + 92597 0.78 0.153407
Target:  5'- gCGCAgCCgcucgcGGCGCGUGCCGGGGcCCc -3'
miRNA:   3'- gGCGUaGGa-----CUGCGCGCGGCCCCuGG- -5'
23802 3' -61.4 NC_005261.1 + 69533 0.78 0.161061
Target:  5'- gCGCGggCgCUGgcGCGCGCGCUGGGGACg -3'
miRNA:   3'- gGCGUa-G-GAC--UGCGCGCGGCCCCUGg -5'
23802 3' -61.4 NC_005261.1 + 131620 0.78 0.165016
Target:  5'- aCGCGcgCCUGGCGCcCGCCGcGaGGACCg -3'
miRNA:   3'- gGCGUa-GGACUGCGcGCGGC-C-CCUGG- -5'
23802 3' -61.4 NC_005261.1 + 34428 0.77 0.16865
Target:  5'- cCCGCG-CCUGccccugcugccgaACGCGCcggggcacggGCCGGGGGCCc -3'
miRNA:   3'- -GGCGUaGGAC-------------UGCGCG----------CGGCCCCUGG- -5'
23802 3' -61.4 NC_005261.1 + 12293 0.77 0.189714
Target:  5'- uCCGCGUCCgccgcgggcacgGGCGCGUaGCCGGcGGGCg -3'
miRNA:   3'- -GGCGUAGGa-----------CUGCGCG-CGGCC-CCUGg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.