miRNA display CGI


Results 1 - 20 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23802 3' -61.4 NC_005261.1 + 60250 0.65 0.719975
Target:  5'- gCCGCGgcgggagcggcggCCgugaaGAgGCGC-CCGGGGuCCg -3'
miRNA:   3'- -GGCGUa------------GGa----CUgCGCGcGGCCCCuGG- -5'
23802 3' -61.4 NC_005261.1 + 100727 0.66 0.666134
Target:  5'- gCCGCG-CCgcGCGCGCGCgCGGcGGCg -3'
miRNA:   3'- -GGCGUaGGacUGCGCGCG-GCCcCUGg -5'
23802 3' -61.4 NC_005261.1 + 50573 0.66 0.675844
Target:  5'- aCGCG-CCUGGCGUcCGCCgcgagcGGGGAg- -3'
miRNA:   3'- gGCGUaGGACUGCGcGCGG------CCCCUgg -5'
23802 3' -61.4 NC_005261.1 + 102720 0.66 0.666134
Target:  5'- gCCGCGUCC--GCGCcCGCCGccaGGGCg -3'
miRNA:   3'- -GGCGUAGGacUGCGcGCGGCc--CCUGg -5'
23802 3' -61.4 NC_005261.1 + 19539 0.66 0.675844
Target:  5'- cCCGCGUCac--CGCcaGCGCCGuGGGgagcGCCa -3'
miRNA:   3'- -GGCGUAGgacuGCG--CGCGGC-CCC----UGG- -5'
23802 3' -61.4 NC_005261.1 + 117849 0.66 0.666134
Target:  5'- uCCGCGUC---GCGuCGCGUUauucggGGGGACCc -3'
miRNA:   3'- -GGCGUAGgacUGC-GCGCGG------CCCCUGG- -5'
23802 3' -61.4 NC_005261.1 + 6413 0.66 0.675844
Target:  5'- gCGCGUuggcccggCCUGcuCGCGagggcgGuCCGGGGGCCg -3'
miRNA:   3'- gGCGUA--------GGACu-GCGCg-----C-GGCCCCUGG- -5'
23802 3' -61.4 NC_005261.1 + 117334 0.66 0.675844
Target:  5'- gCGCAUCCUuGCcCGCGCCcaaGGcGCCg -3'
miRNA:   3'- gGCGUAGGAcUGcGCGCGGc--CCcUGG- -5'
23802 3' -61.4 NC_005261.1 + 68205 0.66 0.666134
Target:  5'- cCCGCcgCC-GGCGCG-GCCGacaacGGcGACCc -3'
miRNA:   3'- -GGCGuaGGaCUGCGCgCGGC-----CC-CUGG- -5'
23802 3' -61.4 NC_005261.1 + 71411 0.66 0.666134
Target:  5'- gCgGCGUCC-GGCGCGgGgcCCGGcccGGGCCc -3'
miRNA:   3'- -GgCGUAGGaCUGCGCgC--GGCC---CCUGG- -5'
23802 3' -61.4 NC_005261.1 + 35680 0.66 0.675844
Target:  5'- gCCGCAcccCCgccGGCgagccccgGUGgGCCGGGGGCUc -3'
miRNA:   3'- -GGCGUa--GGa--CUG--------CGCgCGGCCCCUGG- -5'
23802 3' -61.4 NC_005261.1 + 69360 0.66 0.666134
Target:  5'- aCGCggCCgcGCGCGCGCU--GGACCu -3'
miRNA:   3'- gGCGuaGGacUGCGCGCGGccCCUGG- -5'
23802 3' -61.4 NC_005261.1 + 113564 0.66 0.666134
Target:  5'- aCCGCGagCaGugGUcgguggccgccGCGCUGGGcGACCu -3'
miRNA:   3'- -GGCGUagGaCugCG-----------CGCGGCCC-CUGG- -5'
23802 3' -61.4 NC_005261.1 + 96985 0.66 0.675844
Target:  5'- aCGCggCCUcGGCgcggcuaaGCGCGCCauugGGcGGGCCg -3'
miRNA:   3'- gGCGuaGGA-CUG--------CGCGCGG----CC-CCUGG- -5'
23802 3' -61.4 NC_005261.1 + 28177 0.66 0.675844
Target:  5'- cCCGUcUCgCUG-CGCGCcgaaGCCGGcGGCCu -3'
miRNA:   3'- -GGCGuAG-GACuGCGCG----CGGCCcCUGG- -5'
23802 3' -61.4 NC_005261.1 + 131220 0.66 0.675844
Target:  5'- cCCGCGUaCgUGGcCGCGCGCaucgaGGcuGACCu -3'
miRNA:   3'- -GGCGUA-GgACU-GCGCGCGg----CCc-CUGG- -5'
23802 3' -61.4 NC_005261.1 + 101572 0.66 0.666134
Target:  5'- aUGCG-CUcGGCGCGCGCCGuGG-CCu -3'
miRNA:   3'- gGCGUaGGaCUGCGCGCGGCcCCuGG- -5'
23802 3' -61.4 NC_005261.1 + 71993 0.66 0.675844
Target:  5'- gCGCAgcgucgccCCUGGCcuuaaCGCCGGGGGCg -3'
miRNA:   3'- gGCGUa-------GGACUGcgc--GCGGCCCCUGg -5'
23802 3' -61.4 NC_005261.1 + 46814 0.66 0.675844
Target:  5'- gCGCGga-UGGCGCGCGCCaGGcGCg -3'
miRNA:   3'- gGCGUaggACUGCGCGCGGcCCcUGg -5'
23802 3' -61.4 NC_005261.1 + 117531 0.66 0.675844
Target:  5'- gCGUGUCCac-CGCgGCGCCGGagGGGCUg -3'
miRNA:   3'- gGCGUAGGacuGCG-CGCGGCC--CCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.