miRNA display CGI


Results 21 - 40 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23802 3' -61.4 NC_005261.1 + 58276 0.75 0.241036
Target:  5'- gCCGCGcUCacggGGCcgGCGCGCCGGGGGgCg -3'
miRNA:   3'- -GGCGU-AGga--CUG--CGCGCGGCCCCUgG- -5'
23802 3' -61.4 NC_005261.1 + 97077 0.75 0.240481
Target:  5'- uCCGCGUCg-GAgGCGCcggcuggGCCGGGGGCg -3'
miRNA:   3'- -GGCGUAGgaCUgCGCG-------CGGCCCCUGg -5'
23802 3' -61.4 NC_005261.1 + 97406 0.75 0.235532
Target:  5'- gCCGCGggCUUGGCggGCGCGCCGGGccuGCCc -3'
miRNA:   3'- -GGCGUa-GGACUG--CGCGCGGCCCc--UGG- -5'
23802 3' -61.4 NC_005261.1 + 56314 0.75 0.225364
Target:  5'- cCCGCcugcuacugacgagCCUGGCGCGCGCCGaGG-CCg -3'
miRNA:   3'- -GGCGua------------GGACUGCGCGCGGCcCCuGG- -5'
23802 3' -61.4 NC_005261.1 + 23143 0.74 0.290928
Target:  5'- gUCGCAUUCggccccaaagagugGGCccggcagGCGCGCCGGGGGCg -3'
miRNA:   3'- -GGCGUAGGa-------------CUG-------CGCGCGGCCCCUGg -5'
23802 3' -61.4 NC_005261.1 + 73454 0.74 0.288992
Target:  5'- gCCGCGUCCgcgucCGCGCGCCcccccuGGGCCg -3'
miRNA:   3'- -GGCGUAGGacu--GCGCGCGGcc----CCUGG- -5'
23802 3' -61.4 NC_005261.1 + 33891 0.74 0.288992
Target:  5'- gCGCGUCaccggGGCGCGCGUauaaaGcGGGGCCg -3'
miRNA:   3'- gGCGUAGga---CUGCGCGCGg----C-CCCUGG- -5'
23802 3' -61.4 NC_005261.1 + 69762 0.74 0.27018
Target:  5'- gCGCGggg-GGCG-GCGCCGGGGACUg -3'
miRNA:   3'- gGCGUaggaCUGCgCGCGGCCCCUGG- -5'
23802 3' -61.4 NC_005261.1 + 86890 0.74 0.264132
Target:  5'- gCCGCGcCCUGGucCGCGCGCgGcGcGGACCc -3'
miRNA:   3'- -GGCGUaGGACU--GCGCGCGgC-C-CCUGG- -5'
23802 3' -61.4 NC_005261.1 + 110982 0.74 0.258195
Target:  5'- aCGCcgCCUu-CGUGCGCCuGGGGACg -3'
miRNA:   3'- gGCGuaGGAcuGCGCGCGG-CCCCUGg -5'
23802 3' -61.4 NC_005261.1 + 107360 0.73 0.308817
Target:  5'- cCUGCGUCgUcGugG-GCGCCGGGGcGCCc -3'
miRNA:   3'- -GGCGUAGgA-CugCgCGCGGCCCC-UGG- -5'
23802 3' -61.4 NC_005261.1 + 20975 0.73 0.308817
Target:  5'- aCCGCGgcgcggcgcCCUacccccuuaGACGCGCGCCuuGGGGGCg -3'
miRNA:   3'- -GGCGUa--------GGA---------CUGCGCGCGG--CCCCUGg -5'
23802 3' -61.4 NC_005261.1 + 7055 0.73 0.308817
Target:  5'- uCCGCGUCCgGGCGUGUGgcCCaGGGGCa -3'
miRNA:   3'- -GGCGUAGGaCUGCGCGC--GGcCCCUGg -5'
23802 3' -61.4 NC_005261.1 + 55271 0.73 0.302095
Target:  5'- gCGCccCCUGGCGCGCcggaGgCGGGGGCg -3'
miRNA:   3'- gGCGuaGGACUGCGCG----CgGCCCCUGg -5'
23802 3' -61.4 NC_005261.1 + 37796 0.73 0.302095
Target:  5'- cCCGCGUgCgUGACGa-CGCUGGaGGACCa -3'
miRNA:   3'- -GGCGUA-GgACUGCgcGCGGCC-CCUGG- -5'
23802 3' -61.4 NC_005261.1 + 116176 0.73 0.302095
Target:  5'- gCCGCGUCCccGACGC-CGCUGGGcGcgucGCCg -3'
miRNA:   3'- -GGCGUAGGa-CUGCGcGCGGCCC-C----UGG- -5'
23802 3' -61.4 NC_005261.1 + 63065 0.73 0.302095
Target:  5'- gCCGCGUCgCUGGCGCacaGCGgCGGGuacGCCu -3'
miRNA:   3'- -GGCGUAG-GACUGCG---CGCgGCCCc--UGG- -5'
23802 3' -61.4 NC_005261.1 + 33045 0.73 0.302095
Target:  5'- uCCGCGgagggCCagGACuCgGCGCCGGGGACg -3'
miRNA:   3'- -GGCGUa----GGa-CUGcG-CGCGGCCCCUGg -5'
23802 3' -61.4 NC_005261.1 + 118200 0.73 0.295487
Target:  5'- cCCGCG-CCUGcCGCGCuGCgCGGGGcGCUg -3'
miRNA:   3'- -GGCGUaGGACuGCGCG-CG-GCCCC-UGG- -5'
23802 3' -61.4 NC_005261.1 + 90738 0.73 0.315652
Target:  5'- gCCGCG-CCUGAgGCGCuGgCGcGGGACUu -3'
miRNA:   3'- -GGCGUaGGACUgCGCG-CgGC-CCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.