miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23804 5' -54.2 NC_005261.1 + 75259 0.69 0.83686
Target:  5'- cCGcGCGUACUcggccuUCGAgUGCGCGGuGCUGu -3'
miRNA:   3'- -GC-UGCAUGA------AGCU-GCGCGCCuCGAUg -5'
23804 5' -54.2 NC_005261.1 + 50870 0.69 0.83686
Target:  5'- uCGGCGc-CUUCGcCGCGCuGGcGCUGCu -3'
miRNA:   3'- -GCUGCauGAAGCuGCGCG-CCuCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 5519 0.69 0.826751
Target:  5'- gCGGCGgcgaggccgccgGCUUCGGCGCGCagcgagacggGGGGCg-- -3'
miRNA:   3'- -GCUGCa-----------UGAAGCUGCGCG----------CCUCGaug -5'
23804 5' -54.2 NC_005261.1 + 73726 0.68 0.890003
Target:  5'- uCGGCGUGCgcgcUUG-CGCGCGGGGgUcCg -3'
miRNA:   3'- -GCUGCAUGa---AGCuGCGCGCCUCgAuG- -5'
23804 5' -54.2 NC_005261.1 + 103497 0.68 0.890003
Target:  5'- aGACGUcg-UCGGCGcCGCGGAcgGCgGCg -3'
miRNA:   3'- gCUGCAugaAGCUGC-GCGCCU--CGaUG- -5'
23804 5' -54.2 NC_005261.1 + 137976 0.68 0.890003
Target:  5'- nCGGCGgcgGCUgcggCGGCGgcUGCGGcggcGGCUGCg -3'
miRNA:   3'- -GCUGCa--UGAa---GCUGC--GCGCC----UCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 118584 0.68 0.890003
Target:  5'- gCGGCGcGCgcCGcCGcCGCGGAGCUcGCg -3'
miRNA:   3'- -GCUGCaUGaaGCuGC-GCGCCUCGA-UG- -5'
23804 5' -54.2 NC_005261.1 + 69454 0.68 0.896709
Target:  5'- gGACGaGCUgCGGCGCGuCGaGGGCcACa -3'
miRNA:   3'- gCUGCaUGAaGCUGCGC-GC-CUCGaUG- -5'
23804 5' -54.2 NC_005261.1 + 74878 0.68 0.896709
Target:  5'- gGACGcgGCggCGGCG-GCGGAGUcgGCg -3'
miRNA:   3'- gCUGCa-UGaaGCUGCgCGCCUCGa-UG- -5'
23804 5' -54.2 NC_005261.1 + 62283 0.68 0.896709
Target:  5'- uGugGUACaucacgUCGGCGcCGCGcGGGCgcgcgGCg -3'
miRNA:   3'- gCugCAUGa-----AGCUGC-GCGC-CUCGa----UG- -5'
23804 5' -54.2 NC_005261.1 + 99019 0.68 0.885867
Target:  5'- gCGGCGgcGCggCGGCGCGCgcccacagcacccgcGcGAGCUGCa -3'
miRNA:   3'- -GCUGCa-UGaaGCUGCGCG---------------C-CUCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 98513 0.68 0.883065
Target:  5'- cCGGCGUACgggcaGGCGCGagauccggcCGGuaGGCUGCg -3'
miRNA:   3'- -GCUGCAUGaag--CUGCGC---------GCC--UCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 54883 0.68 0.883065
Target:  5'- gGAUGaUGCgUCGGCGCGCGcGuGCcGCa -3'
miRNA:   3'- gCUGC-AUGaAGCUGCGCGC-CuCGaUG- -5'
23804 5' -54.2 NC_005261.1 + 1449 0.68 0.883065
Target:  5'- gCGGCGgcGCcUCGGCGUGCGGcuccAGCaGCg -3'
miRNA:   3'- -GCUGCa-UGaAGCUGCGCGCC----UCGaUG- -5'
23804 5' -54.2 NC_005261.1 + 49804 0.68 0.883065
Target:  5'- aGACGUcgcccuccGCgg-GGCGCGUGGAGUUAa -3'
miRNA:   3'- gCUGCA--------UGaagCUGCGCGCCUCGAUg -5'
23804 5' -54.2 NC_005261.1 + 137940 0.68 0.8759
Target:  5'- gCGGCGgcgGCUgcggCGGCGgcUGCGGcggcGGCUGCg -3'
miRNA:   3'- -GCUGCa--UGAa---GCUGC--GCGCC----UCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 108178 0.68 0.8759
Target:  5'- gGGCGcGCggccgCGGCuccggGCGCGaGAGCUGCg -3'
miRNA:   3'- gCUGCaUGaa---GCUG-----CGCGC-CUCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 305 0.68 0.8759
Target:  5'- gCGGCGgcgGCUgcggCGGCGgcUGCGGcggcGGCUGCg -3'
miRNA:   3'- -GCUGCa--UGAa---GCUGC--GCGCC----UCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 257 0.68 0.8759
Target:  5'- gCGGCGgcgGCUgcggCGGCGgcUGCGGcggcGGCUGCg -3'
miRNA:   3'- -GCUGCa--UGAa---GCUGC--GCGCC----UCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 97670 0.68 0.903181
Target:  5'- cCGGCGU-CcgCGGgGCuuggGCGGGGCUGCc -3'
miRNA:   3'- -GCUGCAuGaaGCUgCG----CGCCUCGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.