miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23804 5' -54.2 NC_005261.1 + 44257 0.73 0.623602
Target:  5'- cCGACGccg--CGGCGCGCGGGGggGCg -3'
miRNA:   3'- -GCUGCaugaaGCUGCGCGCCUCgaUG- -5'
23804 5' -54.2 NC_005261.1 + 34604 0.73 0.613271
Target:  5'- aCGACGgcCUggcCGACGCGCuGGAGCc-- -3'
miRNA:   3'- -GCUGCauGAa--GCUGCGCG-CCUCGaug -5'
23804 5' -54.2 NC_005261.1 + 114272 0.74 0.561985
Target:  5'- aCGACGcgg--UGGCGCGCGcGGGCUACg -3'
miRNA:   3'- -GCUGCaugaaGCUGCGCGC-CUCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 1054 0.75 0.531754
Target:  5'- gCGGCGUuag-CGGCGCGgGGGGCUGg -3'
miRNA:   3'- -GCUGCAugaaGCUGCGCgCCUCGAUg -5'
23804 5' -54.2 NC_005261.1 + 56691 0.77 0.436102
Target:  5'- gCGACGUACUUUGugGCGgCGacGCUGCu -3'
miRNA:   3'- -GCUGCAUGAAGCugCGC-GCcuCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 134198 0.71 0.745629
Target:  5'- uGGCGcgGCU-CGGCGCGCGGGucGCgGCg -3'
miRNA:   3'- gCUGCa-UGAaGCUGCGCGCCU--CGaUG- -5'
23804 5' -54.2 NC_005261.1 + 71958 0.71 0.755362
Target:  5'- uGGCGU-CggcgCGGgGCGCGGAGCgcgcgGCa -3'
miRNA:   3'- gCUGCAuGaa--GCUgCGCGCCUCGa----UG- -5'
23804 5' -54.2 NC_005261.1 + 49468 0.7 0.819866
Target:  5'- aGGCGggcGCgcaGGcCGCGCGGaAGCUGCa -3'
miRNA:   3'- gCUGCa--UGaagCU-GCGCGCC-UCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 37184 0.7 0.819866
Target:  5'- gGGCGcUGCUggCGGCGCugcugGCGGcGCUACu -3'
miRNA:   3'- gCUGC-AUGAa-GCUGCG-----CGCCuCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 112154 0.7 0.818127
Target:  5'- gCGACGccgaucaugcuCUUCGccggccGCGCGCGGGGCUcGCu -3'
miRNA:   3'- -GCUGCau---------GAAGC------UGCGCGCCUCGA-UG- -5'
23804 5' -54.2 NC_005261.1 + 19085 0.7 0.811104
Target:  5'- -cGCGUGCUUgCGugGCGuUGGaAGUUGCg -3'
miRNA:   3'- gcUGCAUGAA-GCugCGC-GCC-UCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 71186 0.7 0.811104
Target:  5'- gGGCGcaGCUcgCGGgGCGCGGccAGCUGCg -3'
miRNA:   3'- gCUGCa-UGAa-GCUgCGCGCC--UCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 29338 0.7 0.802176
Target:  5'- -cGCGUgcGCUUCGGCgGCGCGG-GCgACa -3'
miRNA:   3'- gcUGCA--UGAAGCUG-CGCGCCuCGaUG- -5'
23804 5' -54.2 NC_005261.1 + 130480 0.7 0.802176
Target:  5'- gCGGCGUGCcUCGGCG-GCGaGGGCcccgACg -3'
miRNA:   3'- -GCUGCAUGaAGCUGCgCGC-CUCGa---UG- -5'
23804 5' -54.2 NC_005261.1 + 95645 0.7 0.802176
Target:  5'- gGGCGaGCg-CGACGCGCGGcGCcGCg -3'
miRNA:   3'- gCUGCaUGaaGCUGCGCGCCuCGaUG- -5'
23804 5' -54.2 NC_005261.1 + 117087 0.7 0.793091
Target:  5'- uCGGCGaguacucgaucaUGCUccCGACGCGCGGcGCUGa -3'
miRNA:   3'- -GCUGC------------AUGAa-GCUGCGCGCCuCGAUg -5'
23804 5' -54.2 NC_005261.1 + 41889 0.7 0.793091
Target:  5'- gCGGCGUAC-UCGcGCaGCGUGGGGUUGg -3'
miRNA:   3'- -GCUGCAUGaAGC-UG-CGCGCCUCGAUg -5'
23804 5' -54.2 NC_005261.1 + 32180 0.7 0.793091
Target:  5'- uGGCcUGCgggCGGCGCGCgcuGGAGCUGg -3'
miRNA:   3'- gCUGcAUGaa-GCUGCGCG---CCUCGAUg -5'
23804 5' -54.2 NC_005261.1 + 127683 0.71 0.774486
Target:  5'- gCGGCGgccGCUgcccCGGCgGCGCcggaGGAGCUGCg -3'
miRNA:   3'- -GCUGCa--UGAa---GCUG-CGCG----CCUCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 49574 0.71 0.774486
Target:  5'- gGGCGUgaacacggGCUcggGGCGCGCGGcGCUGCu -3'
miRNA:   3'- gCUGCA--------UGAag-CUGCGCGCCuCGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.