miRNA display CGI


Results 41 - 60 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23807 5' -62.6 NC_005261.1 + 13992 0.67 0.567392
Target:  5'- cCUGuCGCcCGcCGGAUCGGGCCgCUcggugagcUCUGc -3'
miRNA:   3'- -GAC-GCGcGC-GCCUAGCCCGG-GA--------AGGC- -5'
23807 5' -62.6 NC_005261.1 + 40042 0.67 0.55775
Target:  5'- -cGCGaccaGCGUGGcgaCGGGCCCgugCUGg -3'
miRNA:   3'- gaCGCg---CGCGCCua-GCCCGGGaa-GGC- -5'
23807 5' -62.6 NC_005261.1 + 48339 0.67 0.55775
Target:  5'- -gGCGCGCGCGG--CGaGGCCgaggagCCGg -3'
miRNA:   3'- gaCGCGCGCGCCuaGC-CCGGgaa---GGC- -5'
23807 5' -62.6 NC_005261.1 + 103439 0.67 0.556789
Target:  5'- -cGCGCGCGCGccucgcGGUCGGccgccgcGCCCgucgCCa -3'
miRNA:   3'- gaCGCGCGCGC------CUAGCC-------CGGGaa--GGc -5'
23807 5' -62.6 NC_005261.1 + 110238 0.67 0.548155
Target:  5'- -aGCGUGgGCGGcgCGGcGCCCggggggCUGc -3'
miRNA:   3'- gaCGCGCgCGCCuaGCC-CGGGaa----GGC- -5'
23807 5' -62.6 NC_005261.1 + 23486 0.67 0.548155
Target:  5'- gUGCGCGgGCccgccugggcaGGcgCGGGCCCUg--- -3'
miRNA:   3'- gACGCGCgCG-----------CCuaGCCCGGGAaggc -5'
23807 5' -62.6 NC_005261.1 + 44753 0.67 0.548155
Target:  5'- gCUGCGCGCgacccgggaGCGGAgCGGGagCCgcagCCGc -3'
miRNA:   3'- -GACGCGCG---------CGCCUaGCCCg-GGaa--GGC- -5'
23807 5' -62.6 NC_005261.1 + 62215 0.67 0.545287
Target:  5'- -gGUGCGCGCGGccgcGUCuGcGCCCUcgcggugcugcacgUCCGg -3'
miRNA:   3'- gaCGCGCGCGCC----UAGcC-CGGGA--------------AGGC- -5'
23807 5' -62.6 NC_005261.1 + 83066 0.67 0.538613
Target:  5'- cCUGCGCGCccccGCGGcggCcGGCgCUUCCa -3'
miRNA:   3'- -GACGCGCG----CGCCua-GcCCGgGAAGGc -5'
23807 5' -62.6 NC_005261.1 + 33745 0.67 0.538613
Target:  5'- -cGCGCgGCGcCGGGgcCGGGCCCgcUCGc -3'
miRNA:   3'- gaCGCG-CGC-GCCUa-GCCCGGGaaGGC- -5'
23807 5' -62.6 NC_005261.1 + 14174 0.67 0.538613
Target:  5'- -cGCGCgucucgggGCGCGGGUCaGGCCCa---- -3'
miRNA:   3'- gaCGCG--------CGCGCCUAGcCCGGGaaggc -5'
23807 5' -62.6 NC_005261.1 + 119065 0.67 0.538613
Target:  5'- -cGCGCGUGUGcuuUCGuGGCCCgggCCa -3'
miRNA:   3'- gaCGCGCGCGCcu-AGC-CCGGGaa-GGc -5'
23807 5' -62.6 NC_005261.1 + 32192 0.67 0.529129
Target:  5'- -gGCGCGCGCuGGAgcuGGcGCCCgacgagcugCCGg -3'
miRNA:   3'- gaCGCGCGCG-CCUag-CC-CGGGaa-------GGC- -5'
23807 5' -62.6 NC_005261.1 + 46809 0.67 0.529129
Target:  5'- -gGCGCGCGCGGAU--GGCgCgcgCCa -3'
miRNA:   3'- gaCGCGCGCGCCUAgcCCGgGaa-GGc -5'
23807 5' -62.6 NC_005261.1 + 116480 0.67 0.529129
Target:  5'- -gGCGCGgGCGGggCGGGCgCg--CGg -3'
miRNA:   3'- gaCGCGCgCGCCuaGCCCGgGaagGC- -5'
23807 5' -62.6 NC_005261.1 + 47771 0.67 0.519706
Target:  5'- -gGCGCGUcucccgguagaaGCGGAa-GGGCCCgaUCCGc -3'
miRNA:   3'- gaCGCGCG------------CGCCUagCCCGGGa-AGGC- -5'
23807 5' -62.6 NC_005261.1 + 97005 0.67 0.519706
Target:  5'- -aGCGCGCcauuggGCGGGccgUCGGGCgCgcCCGg -3'
miRNA:   3'- gaCGCGCG------CGCCU---AGCCCGgGaaGGC- -5'
23807 5' -62.6 NC_005261.1 + 116159 0.67 0.519706
Target:  5'- -aGCaGCGCGCGG-UCGcGGCCgCgUCCc -3'
miRNA:   3'- gaCG-CGCGCGCCuAGC-CCGG-GaAGGc -5'
23807 5' -62.6 NC_005261.1 + 118845 0.68 0.51035
Target:  5'- uCUGCG-GCGCGGAgggCGGcgcGCCCgcggCCc -3'
miRNA:   3'- -GACGCgCGCGCCUa--GCC---CGGGaa--GGc -5'
23807 5' -62.6 NC_005261.1 + 20456 0.68 0.51035
Target:  5'- gUGCcCGCGCGGGUguGGCgCUUCCu -3'
miRNA:   3'- gACGcGCGCGCCUAgcCCGgGAAGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.