Results 21 - 40 of 115 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23807 | 5' | -62.6 | NC_005261.1 | + | 58490 | 0.66 | 0.596545 |
Target: 5'- -gGCcgGCGCGCGGccgcuuUUGGcGCCCgcgUCCa -3' miRNA: 3'- gaCG--CGCGCGCCu-----AGCC-CGGGa--AGGc -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 59571 | 0.66 | 0.596545 |
Target: 5'- -cGCGCGCGCGccgcagCGGGUgCCgcgCCGc -3' miRNA: 3'- gaCGCGCGCGCcua---GCCCG-GGaa-GGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 23629 | 0.66 | 0.596545 |
Target: 5'- -gGCGCgGCGgGGGUCGGGCgg--CUGg -3' miRNA: 3'- gaCGCG-CGCgCCUAGCCCGggaaGGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 17914 | 0.66 | 0.595569 |
Target: 5'- -gGCGCcgauuaGCaGCGaGUCGGGCCCgcuggcgUUCCGg -3' miRNA: 3'- gaCGCG------CG-CGCcUAGCCCGGG-------AAGGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 74070 | 0.66 | 0.590692 |
Target: 5'- gCUGCGCGaCGCGGccCGGcuugugcgcgaccucGCCCccCCGg -3' miRNA: 3'- -GACGCGC-GCGCCuaGCC---------------CGGGaaGGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 29409 | 0.66 | 0.586795 |
Target: 5'- -cGCGCGCuacgcgGCGGccgCGGGgCCCgcggCCGu -3' miRNA: 3'- gaCGCGCG------CGCCua-GCCC-GGGaa--GGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 28776 | 0.66 | 0.586795 |
Target: 5'- cCUGgGC-CGCGGcgCGGGCgCUcgcggCCGc -3' miRNA: 3'- -GACgCGcGCGCCuaGCCCGgGAa----GGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 14457 | 0.66 | 0.586795 |
Target: 5'- -gGCGCGCgGCGGAgcUCGcgcuGGUCCU-CCa -3' miRNA: 3'- gaCGCGCG-CGCCU--AGC----CCGGGAaGGc -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 38731 | 0.66 | 0.586795 |
Target: 5'- -aGCGCcCGCaGAgccCGGGCCCgcgCCa -3' miRNA: 3'- gaCGCGcGCGcCUa--GCCCGGGaa-GGc -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 52801 | 0.66 | 0.586795 |
Target: 5'- uUGCGUGcCGCGGGUUggcaaacagGGGCgCUUCg- -3' miRNA: 3'- gACGCGC-GCGCCUAG---------CCCGgGAAGgc -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 94996 | 0.66 | 0.586795 |
Target: 5'- -cGCGCGCcccgcccuGCGGggCGGGCUauaaagCCGc -3' miRNA: 3'- gaCGCGCG--------CGCCuaGCCCGGgaa---GGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 129616 | 0.66 | 0.586795 |
Target: 5'- -cGCG-GCG-GGGUCGGGCgCCUUUg- -3' miRNA: 3'- gaCGCgCGCgCCUAGCCCG-GGAAGgc -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 68972 | 0.66 | 0.577076 |
Target: 5'- gUGCGCGCcaccGCGGcccuuuUCGGGCCgCgcgggcgCCGc -3' miRNA: 3'- gACGCGCG----CGCCu-----AGCCCGG-Gaa-----GGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 59961 | 0.66 | 0.577076 |
Target: 5'- -gGCGCGCGUgaacGGGUCGaagaaGGCgCCgUCCGc -3' miRNA: 3'- gaCGCGCGCG----CCUAGC-----CCG-GGaAGGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 4530 | 0.66 | 0.577076 |
Target: 5'- -gGCGC-CGCGGcgagggcgcCGGGCCCUggCCu -3' miRNA: 3'- gaCGCGcGCGCCua-------GCCCGGGAa-GGc -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 97180 | 0.66 | 0.577076 |
Target: 5'- -cGCGgGCGCcGGcCGGGCCgCggCCGg -3' miRNA: 3'- gaCGCgCGCGcCUaGCCCGG-GaaGGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 124941 | 0.67 | 0.567392 |
Target: 5'- -cGCGCGCGCuGugcCGGcGCCCUggagcCCGc -3' miRNA: 3'- gaCGCGCGCGcCua-GCC-CGGGAa----GGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 135001 | 0.67 | 0.567392 |
Target: 5'- -gGCGCcccugGCGCGG--CGGGCCCgcacgcggCCGc -3' miRNA: 3'- gaCGCG-----CGCGCCuaGCCCGGGaa------GGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 102204 | 0.67 | 0.567392 |
Target: 5'- -gGCGCGUGCGGGUUGaacgcaagcacGGCCUcgauggCCGc -3' miRNA: 3'- gaCGCGCGCGCCUAGC-----------CCGGGaa----GGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 13992 | 0.67 | 0.567392 |
Target: 5'- cCUGuCGCcCGcCGGAUCGGGCCgCUcggugagcUCUGc -3' miRNA: 3'- -GAC-GCGcGC-GCCUAGCCCGG-GA--------AGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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