Results 21 - 40 of 115 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23807 | 5' | -62.6 | NC_005261.1 | + | 72 | 0.71 | 0.332102 |
Target: 5'- -gGCGCGCGCGGGggcggggUgcggggcgcgccccCGGGCCCcgCCGc -3' miRNA: 3'- gaCGCGCGCGCCU-------A--------------GCCCGGGaaGGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 128110 | 0.71 | 0.342275 |
Target: 5'- -gGCGCgGCGCgGGGUCGGGCCgagUgCGg -3' miRNA: 3'- gaCGCG-CGCG-CCUAGCCCGGga-AgGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 35468 | 0.7 | 0.364824 |
Target: 5'- -gGCGCGCGCGcGUCccgGGGuCCCUgCCGc -3' miRNA: 3'- gaCGCGCGCGCcUAG---CCC-GGGAaGGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 38663 | 0.7 | 0.372565 |
Target: 5'- -gGCGgGUGCGGGccCGGGCCCg-CCa -3' miRNA: 3'- gaCGCgCGCGCCUa-GCCCGGGaaGGc -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 49455 | 0.7 | 0.372565 |
Target: 5'- -cGCGCGcCGCGGAaggCGGGCgCgcaggCCGc -3' miRNA: 3'- gaCGCGC-GCGCCUa--GCCCGgGaa---GGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 107653 | 0.7 | 0.380417 |
Target: 5'- gCUGCGCGCGCaaacucCGcGGCCCcgCCGg -3' miRNA: 3'- -GACGCGCGCGccua--GC-CCGGGaaGGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 69226 | 0.7 | 0.383588 |
Target: 5'- gCUGUGCGCGCuGGggCGguucgccgaggcgcuGGCCCgcgCCGa -3' miRNA: 3'- -GACGCGCGCG-CCuaGC---------------CCGGGaa-GGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 44040 | 0.7 | 0.383588 |
Target: 5'- -cGCGCGgcggcCGCGGG-CGGGCagcagauccaggacgCCUUCCGg -3' miRNA: 3'- gaCGCGC-----GCGCCUaGCCCG---------------GGAAGGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 39462 | 0.69 | 0.404626 |
Target: 5'- -cGCGCgGCGCGGcgccccaaCGGGCCCg-CCGc -3' miRNA: 3'- gaCGCG-CGCGCCua------GCCCGGGaaGGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 89421 | 0.69 | 0.404626 |
Target: 5'- -cGCGUGCGCGGccgcCGGGCUCc-CCGc -3' miRNA: 3'- gaCGCGCGCGCCua--GCCCGGGaaGGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 1843 | 0.69 | 0.404626 |
Target: 5'- -gGCGCGCGCGaaggcgcCGGGCCCgaagacgcgCCGc -3' miRNA: 3'- gaCGCGCGCGCcua----GCCCGGGaa-------GGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 15287 | 0.69 | 0.404626 |
Target: 5'- -gGgGCGCGCGG-UCGcGGCC--UCCGg -3' miRNA: 3'- gaCgCGCGCGCCuAGC-CCGGgaAGGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 129366 | 0.69 | 0.412909 |
Target: 5'- --cCGCGCGCGGGucgcgcggcuUCGGGUCCa-CCGg -3' miRNA: 3'- gacGCGCGCGCCU----------AGCCCGGGaaGGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 74710 | 0.69 | 0.429785 |
Target: 5'- -cGCGgGCGCGGAacCGGGCCgCggcagcggCCGc -3' miRNA: 3'- gaCGCgCGCGCCUa-GCCCGG-Gaa------GGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 3896 | 0.69 | 0.438374 |
Target: 5'- -gGCGaGCGCGGcgCGGGCgCCcgcgCCGc -3' miRNA: 3'- gaCGCgCGCGCCuaGCCCG-GGaa--GGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 71502 | 0.69 | 0.438374 |
Target: 5'- -gGUGCGCGCGaaagucggCGGGCUCgUCCGc -3' miRNA: 3'- gaCGCGCGCGCcua-----GCCCGGGaAGGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 127887 | 0.69 | 0.438374 |
Target: 5'- -cGCGCcgGCGCccGUCGGGCCCgggCCu -3' miRNA: 3'- gaCGCG--CGCGccUAGCCCGGGaa-GGc -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 68166 | 0.69 | 0.441837 |
Target: 5'- --aCGCGCGCGGAgcucgcgcgcgccgCGGGCCCccucgCCc -3' miRNA: 3'- gacGCGCGCGCCUa-------------GCCCGGGaa---GGc -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 15965 | 0.69 | 0.44706 |
Target: 5'- gUG-GCGgGCGGGggaGGGCCCgggCCGc -3' miRNA: 3'- gACgCGCgCGCCUag-CCCGGGaa-GGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 132179 | 0.69 | 0.454077 |
Target: 5'- -aGCGCGgGCGG---GGGCCCgcauugcuugggUCCGg -3' miRNA: 3'- gaCGCGCgCGCCuagCCCGGGa-----------AGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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