miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23807 5' -62.6 NC_005261.1 + 72 0.71 0.332102
Target:  5'- -gGCGCGCGCGGGggcggggUgcggggcgcgccccCGGGCCCcgCCGc -3'
miRNA:   3'- gaCGCGCGCGCCU-------A--------------GCCCGGGaaGGC- -5'
23807 5' -62.6 NC_005261.1 + 128110 0.71 0.342275
Target:  5'- -gGCGCgGCGCgGGGUCGGGCCgagUgCGg -3'
miRNA:   3'- gaCGCG-CGCG-CCUAGCCCGGga-AgGC- -5'
23807 5' -62.6 NC_005261.1 + 35468 0.7 0.364824
Target:  5'- -gGCGCGCGCGcGUCccgGGGuCCCUgCCGc -3'
miRNA:   3'- gaCGCGCGCGCcUAG---CCC-GGGAaGGC- -5'
23807 5' -62.6 NC_005261.1 + 38663 0.7 0.372565
Target:  5'- -gGCGgGUGCGGGccCGGGCCCg-CCa -3'
miRNA:   3'- gaCGCgCGCGCCUa-GCCCGGGaaGGc -5'
23807 5' -62.6 NC_005261.1 + 49455 0.7 0.372565
Target:  5'- -cGCGCGcCGCGGAaggCGGGCgCgcaggCCGc -3'
miRNA:   3'- gaCGCGC-GCGCCUa--GCCCGgGaa---GGC- -5'
23807 5' -62.6 NC_005261.1 + 107653 0.7 0.380417
Target:  5'- gCUGCGCGCGCaaacucCGcGGCCCcgCCGg -3'
miRNA:   3'- -GACGCGCGCGccua--GC-CCGGGaaGGC- -5'
23807 5' -62.6 NC_005261.1 + 69226 0.7 0.383588
Target:  5'- gCUGUGCGCGCuGGggCGguucgccgaggcgcuGGCCCgcgCCGa -3'
miRNA:   3'- -GACGCGCGCG-CCuaGC---------------CCGGGaa-GGC- -5'
23807 5' -62.6 NC_005261.1 + 44040 0.7 0.383588
Target:  5'- -cGCGCGgcggcCGCGGG-CGGGCagcagauccaggacgCCUUCCGg -3'
miRNA:   3'- gaCGCGC-----GCGCCUaGCCCG---------------GGAAGGC- -5'
23807 5' -62.6 NC_005261.1 + 89421 0.69 0.404626
Target:  5'- -cGCGUGCGCGGccgcCGGGCUCc-CCGc -3'
miRNA:   3'- gaCGCGCGCGCCua--GCCCGGGaaGGC- -5'
23807 5' -62.6 NC_005261.1 + 39462 0.69 0.404626
Target:  5'- -cGCGCgGCGCGGcgccccaaCGGGCCCg-CCGc -3'
miRNA:   3'- gaCGCG-CGCGCCua------GCCCGGGaaGGC- -5'
23807 5' -62.6 NC_005261.1 + 1843 0.69 0.404626
Target:  5'- -gGCGCGCGCGaaggcgcCGGGCCCgaagacgcgCCGc -3'
miRNA:   3'- gaCGCGCGCGCcua----GCCCGGGaa-------GGC- -5'
23807 5' -62.6 NC_005261.1 + 15287 0.69 0.404626
Target:  5'- -gGgGCGCGCGG-UCGcGGCC--UCCGg -3'
miRNA:   3'- gaCgCGCGCGCCuAGC-CCGGgaAGGC- -5'
23807 5' -62.6 NC_005261.1 + 129366 0.69 0.412909
Target:  5'- --cCGCGCGCGGGucgcgcggcuUCGGGUCCa-CCGg -3'
miRNA:   3'- gacGCGCGCGCCU----------AGCCCGGGaaGGC- -5'
23807 5' -62.6 NC_005261.1 + 74710 0.69 0.429785
Target:  5'- -cGCGgGCGCGGAacCGGGCCgCggcagcggCCGc -3'
miRNA:   3'- gaCGCgCGCGCCUa-GCCCGG-Gaa------GGC- -5'
23807 5' -62.6 NC_005261.1 + 127887 0.69 0.438374
Target:  5'- -cGCGCcgGCGCccGUCGGGCCCgggCCu -3'
miRNA:   3'- gaCGCG--CGCGccUAGCCCGGGaa-GGc -5'
23807 5' -62.6 NC_005261.1 + 71502 0.69 0.438374
Target:  5'- -gGUGCGCGCGaaagucggCGGGCUCgUCCGc -3'
miRNA:   3'- gaCGCGCGCGCcua-----GCCCGGGaAGGC- -5'
23807 5' -62.6 NC_005261.1 + 3896 0.69 0.438374
Target:  5'- -gGCGaGCGCGGcgCGGGCgCCcgcgCCGc -3'
miRNA:   3'- gaCGCgCGCGCCuaGCCCG-GGaa--GGC- -5'
23807 5' -62.6 NC_005261.1 + 68166 0.69 0.441837
Target:  5'- --aCGCGCGCGGAgcucgcgcgcgccgCGGGCCCccucgCCc -3'
miRNA:   3'- gacGCGCGCGCCUa-------------GCCCGGGaa---GGc -5'
23807 5' -62.6 NC_005261.1 + 15965 0.69 0.44706
Target:  5'- gUG-GCGgGCGGGggaGGGCCCgggCCGc -3'
miRNA:   3'- gACgCGCgCGCCUag-CCCGGGaa-GGC- -5'
23807 5' -62.6 NC_005261.1 + 132179 0.69 0.454077
Target:  5'- -aGCGCGgGCGG---GGGCCCgcauugcuugggUCCGg -3'
miRNA:   3'- gaCGCGCgCGCCuagCCCGGGa-----------AGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.