Results 21 - 40 of 115 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23807 | 5' | -62.6 | NC_005261.1 | + | 28776 | 0.66 | 0.586795 |
Target: 5'- cCUGgGC-CGCGGcgCGGGCgCUcgcggCCGc -3' miRNA: 3'- -GACgCGcGCGCCuaGCCCGgGAa----GGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 28898 | 0.71 | 0.319351 |
Target: 5'- cCUGCGCccaaCGCGGAggaaguugacgcCGGGCCCgaggCCGa -3' miRNA: 3'- -GACGCGc---GCGCCUa-----------GCCCGGGaa--GGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 29409 | 0.66 | 0.586795 |
Target: 5'- -cGCGCGCuacgcgGCGGccgCGGGgCCCgcggCCGu -3' miRNA: 3'- gaCGCGCG------CGCCua-GCCC-GGGaa--GGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 31839 | 0.68 | 0.501065 |
Target: 5'- -cGCGCGCcgugcuggccucGCGGcgcgucuUCGGGCCCggcgCCu -3' miRNA: 3'- gaCGCGCG------------CGCCu------AGCCCGGGaa--GGc -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 32192 | 0.67 | 0.529129 |
Target: 5'- -gGCGCGCGCuGGAgcuGGcGCCCgacgagcugCCGg -3' miRNA: 3'- gaCGCGCGCG-CCUag-CC-CGGGaa-------GGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 33745 | 0.67 | 0.538613 |
Target: 5'- -cGCGCgGCGcCGGGgcCGGGCCCgcUCGc -3' miRNA: 3'- gaCGCG-CGC-GCCUa-GCCCGGGaaGGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 34683 | 0.66 | 0.606319 |
Target: 5'- -aGCGCGCuGCGuGAcggUGGGCCCcUCg- -3' miRNA: 3'- gaCGCGCG-CGC-CUa--GCCCGGGaAGgc -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 35468 | 0.7 | 0.364824 |
Target: 5'- -gGCGCGCGCGcGUCccgGGGuCCCUgCCGc -3' miRNA: 3'- gaCGCGCGCGCcUAG---CCC-GGGAaGGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 38663 | 0.7 | 0.372565 |
Target: 5'- -gGCGgGUGCGGGccCGGGCCCg-CCa -3' miRNA: 3'- gaCGCgCGCGCCUa-GCCCGGGaaGGc -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 38731 | 0.66 | 0.586795 |
Target: 5'- -aGCGCcCGCaGAgccCGGGCCCgcgCCa -3' miRNA: 3'- gaCGCGcGCGcCUa--GCCCGGGaa-GGc -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 39350 | 0.66 | 0.62003 |
Target: 5'- gCUGCGCGCgGCGGcagccgccucAUCGgcggccggggagggcGGCCCUggCGg -3' miRNA: 3'- -GACGCGCG-CGCC----------UAGC---------------CCGGGAagGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 39462 | 0.69 | 0.404626 |
Target: 5'- -cGCGCgGCGCGGcgccccaaCGGGCCCg-CCGc -3' miRNA: 3'- gaCGCG-CGCGCCua------GCCCGGGaaGGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 40042 | 0.67 | 0.55775 |
Target: 5'- -cGCGaccaGCGUGGcgaCGGGCCCgugCUGg -3' miRNA: 3'- gaCGCg---CGCGCCua-GCCCGGGaa-GGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 40361 | 0.66 | 0.625913 |
Target: 5'- gCU-CGCGCaGCGGGUUGaGGUUCaUCCGg -3' miRNA: 3'- -GAcGCGCG-CGCCUAGC-CCGGGaAGGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 44040 | 0.7 | 0.383588 |
Target: 5'- -cGCGCGgcggcCGCGGG-CGGGCagcagauccaggacgCCUUCCGg -3' miRNA: 3'- gaCGCGC-----GCGCCUaGCCCG---------------GGAAGGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 44267 | 0.72 | 0.293651 |
Target: 5'- -gGCGCGCGgGGGggcgGGGCCCgccgCCa -3' miRNA: 3'- gaCGCGCGCgCCUag--CCCGGGaa--GGc -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 44753 | 0.67 | 0.548155 |
Target: 5'- gCUGCGCGCgacccgggaGCGGAgCGGGagCCgcagCCGc -3' miRNA: 3'- -GACGCGCG---------CGCCUaGCCCg-GGaa--GGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 45621 | 0.77 | 0.137682 |
Target: 5'- -gGCGCgGCGCGGcgcggCGGGCCCgcgCCGg -3' miRNA: 3'- gaCGCG-CGCGCCua---GCCCGGGaa-GGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 46809 | 0.67 | 0.529129 |
Target: 5'- -gGCGCGCGCGGAU--GGCgCgcgCCa -3' miRNA: 3'- gaCGCGCGCGCCUAgcCCGgGaa-GGc -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 47771 | 0.67 | 0.519706 |
Target: 5'- -gGCGCGUcucccgguagaaGCGGAa-GGGCCCgaUCCGc -3' miRNA: 3'- gaCGCGCG------------CGCCUagCCCGGGa-AGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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