miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23807 5' -62.6 NC_005261.1 + 28776 0.66 0.586795
Target:  5'- cCUGgGC-CGCGGcgCGGGCgCUcgcggCCGc -3'
miRNA:   3'- -GACgCGcGCGCCuaGCCCGgGAa----GGC- -5'
23807 5' -62.6 NC_005261.1 + 28898 0.71 0.319351
Target:  5'- cCUGCGCccaaCGCGGAggaaguugacgcCGGGCCCgaggCCGa -3'
miRNA:   3'- -GACGCGc---GCGCCUa-----------GCCCGGGaa--GGC- -5'
23807 5' -62.6 NC_005261.1 + 29409 0.66 0.586795
Target:  5'- -cGCGCGCuacgcgGCGGccgCGGGgCCCgcggCCGu -3'
miRNA:   3'- gaCGCGCG------CGCCua-GCCC-GGGaa--GGC- -5'
23807 5' -62.6 NC_005261.1 + 31839 0.68 0.501065
Target:  5'- -cGCGCGCcgugcuggccucGCGGcgcgucuUCGGGCCCggcgCCu -3'
miRNA:   3'- gaCGCGCG------------CGCCu------AGCCCGGGaa--GGc -5'
23807 5' -62.6 NC_005261.1 + 32192 0.67 0.529129
Target:  5'- -gGCGCGCGCuGGAgcuGGcGCCCgacgagcugCCGg -3'
miRNA:   3'- gaCGCGCGCG-CCUag-CC-CGGGaa-------GGC- -5'
23807 5' -62.6 NC_005261.1 + 33745 0.67 0.538613
Target:  5'- -cGCGCgGCGcCGGGgcCGGGCCCgcUCGc -3'
miRNA:   3'- gaCGCG-CGC-GCCUa-GCCCGGGaaGGC- -5'
23807 5' -62.6 NC_005261.1 + 34683 0.66 0.606319
Target:  5'- -aGCGCGCuGCGuGAcggUGGGCCCcUCg- -3'
miRNA:   3'- gaCGCGCG-CGC-CUa--GCCCGGGaAGgc -5'
23807 5' -62.6 NC_005261.1 + 35468 0.7 0.364824
Target:  5'- -gGCGCGCGCGcGUCccgGGGuCCCUgCCGc -3'
miRNA:   3'- gaCGCGCGCGCcUAG---CCC-GGGAaGGC- -5'
23807 5' -62.6 NC_005261.1 + 38663 0.7 0.372565
Target:  5'- -gGCGgGUGCGGGccCGGGCCCg-CCa -3'
miRNA:   3'- gaCGCgCGCGCCUa-GCCCGGGaaGGc -5'
23807 5' -62.6 NC_005261.1 + 38731 0.66 0.586795
Target:  5'- -aGCGCcCGCaGAgccCGGGCCCgcgCCa -3'
miRNA:   3'- gaCGCGcGCGcCUa--GCCCGGGaa-GGc -5'
23807 5' -62.6 NC_005261.1 + 39350 0.66 0.62003
Target:  5'- gCUGCGCGCgGCGGcagccgccucAUCGgcggccggggagggcGGCCCUggCGg -3'
miRNA:   3'- -GACGCGCG-CGCC----------UAGC---------------CCGGGAagGC- -5'
23807 5' -62.6 NC_005261.1 + 39462 0.69 0.404626
Target:  5'- -cGCGCgGCGCGGcgccccaaCGGGCCCg-CCGc -3'
miRNA:   3'- gaCGCG-CGCGCCua------GCCCGGGaaGGC- -5'
23807 5' -62.6 NC_005261.1 + 40042 0.67 0.55775
Target:  5'- -cGCGaccaGCGUGGcgaCGGGCCCgugCUGg -3'
miRNA:   3'- gaCGCg---CGCGCCua-GCCCGGGaa-GGC- -5'
23807 5' -62.6 NC_005261.1 + 40361 0.66 0.625913
Target:  5'- gCU-CGCGCaGCGGGUUGaGGUUCaUCCGg -3'
miRNA:   3'- -GAcGCGCG-CGCCUAGC-CCGGGaAGGC- -5'
23807 5' -62.6 NC_005261.1 + 44040 0.7 0.383588
Target:  5'- -cGCGCGgcggcCGCGGG-CGGGCagcagauccaggacgCCUUCCGg -3'
miRNA:   3'- gaCGCGC-----GCGCCUaGCCCG---------------GGAAGGC- -5'
23807 5' -62.6 NC_005261.1 + 44267 0.72 0.293651
Target:  5'- -gGCGCGCGgGGGggcgGGGCCCgccgCCa -3'
miRNA:   3'- gaCGCGCGCgCCUag--CCCGGGaa--GGc -5'
23807 5' -62.6 NC_005261.1 + 44753 0.67 0.548155
Target:  5'- gCUGCGCGCgacccgggaGCGGAgCGGGagCCgcagCCGc -3'
miRNA:   3'- -GACGCGCG---------CGCCUaGCCCg-GGaa--GGC- -5'
23807 5' -62.6 NC_005261.1 + 45621 0.77 0.137682
Target:  5'- -gGCGCgGCGCGGcgcggCGGGCCCgcgCCGg -3'
miRNA:   3'- gaCGCG-CGCGCCua---GCCCGGGaa-GGC- -5'
23807 5' -62.6 NC_005261.1 + 46809 0.67 0.529129
Target:  5'- -gGCGCGCGCGGAU--GGCgCgcgCCa -3'
miRNA:   3'- gaCGCGCGCGCCUAgcCCGgGaa-GGc -5'
23807 5' -62.6 NC_005261.1 + 47771 0.67 0.519706
Target:  5'- -gGCGCGUcucccgguagaaGCGGAa-GGGCCCgaUCCGc -3'
miRNA:   3'- gaCGCGCG------------CGCCUagCCCGGGa-AGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.