miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23807 5' -62.6 NC_005261.1 + 72 0.71 0.332102
Target:  5'- -gGCGCGCGCGGGggcggggUgcggggcgcgccccCGGGCCCcgCCGc -3'
miRNA:   3'- gaCGCGCGCGCCU-------A--------------GCCCGGGaaGGC- -5'
23807 5' -62.6 NC_005261.1 + 1843 0.69 0.404626
Target:  5'- -gGCGCGCGCGaaggcgcCGGGCCCgaagacgcgCCGc -3'
miRNA:   3'- gaCGCGCGCGCcua----GCCCGGGaa-------GGC- -5'
23807 5' -62.6 NC_005261.1 + 3547 0.66 0.625913
Target:  5'- -cGCGCaGCGCGG--CGGGCgCggcgCCGc -3'
miRNA:   3'- gaCGCG-CGCGCCuaGCCCGgGaa--GGC- -5'
23807 5' -62.6 NC_005261.1 + 3896 0.69 0.438374
Target:  5'- -gGCGaGCGCGGcgCGGGCgCCcgcgCCGc -3'
miRNA:   3'- gaCGCgCGCGCCuaGCCCG-GGaa--GGC- -5'
23807 5' -62.6 NC_005261.1 + 4530 0.66 0.577076
Target:  5'- -gGCGC-CGCGGcgagggcgcCGGGCCCUggCCu -3'
miRNA:   3'- gaCGCGcGCGCCua-------GCCCGGGAa-GGc -5'
23807 5' -62.6 NC_005261.1 + 11899 0.68 0.464714
Target:  5'- -cGCGCGCcCGccgCGGGCCCggcCCGg -3'
miRNA:   3'- gaCGCGCGcGCcuaGCCCGGGaa-GGC- -5'
23807 5' -62.6 NC_005261.1 + 13992 0.67 0.567392
Target:  5'- cCUGuCGCcCGcCGGAUCGGGCCgCUcggugagcUCUGc -3'
miRNA:   3'- -GAC-GCGcGC-GCCUAGCCCGG-GA--------AGGC- -5'
23807 5' -62.6 NC_005261.1 + 14174 0.67 0.538613
Target:  5'- -cGCGCgucucgggGCGCGGGUCaGGCCCa---- -3'
miRNA:   3'- gaCGCG--------CGCGCCUAGcCCGGGaaggc -5'
23807 5' -62.6 NC_005261.1 + 14457 0.66 0.586795
Target:  5'- -gGCGCGCgGCGGAgcUCGcgcuGGUCCU-CCa -3'
miRNA:   3'- gaCGCGCG-CGCCU--AGC----CCGGGAaGGc -5'
23807 5' -62.6 NC_005261.1 + 15287 0.69 0.404626
Target:  5'- -gGgGCGCGCGG-UCGcGGCC--UCCGg -3'
miRNA:   3'- gaCgCGCGCGCCuAGC-CCGGgaAGGC- -5'
23807 5' -62.6 NC_005261.1 + 15965 0.69 0.44706
Target:  5'- gUG-GCGgGCGGGggaGGGCCCgggCCGc -3'
miRNA:   3'- gACgCGCgCGCCUag-CCCGGGaa-GGC- -5'
23807 5' -62.6 NC_005261.1 + 16714 0.66 0.61611
Target:  5'- -aGCGCGCGCcGGUaCuGGCCCUcggcgagCCGc -3'
miRNA:   3'- gaCGCGCGCGcCUA-GcCCGGGAa------GGC- -5'
23807 5' -62.6 NC_005261.1 + 17914 0.66 0.595569
Target:  5'- -gGCGCcgauuaGCaGCGaGUCGGGCCCgcuggcgUUCCGg -3'
miRNA:   3'- gaCGCG------CG-CGCcUAGCCCGGG-------AAGGC- -5'
23807 5' -62.6 NC_005261.1 + 19752 0.71 0.313804
Target:  5'- -cGCGCucccGCGCGGGcgCGGGCCCcgUCGc -3'
miRNA:   3'- gaCGCG----CGCGCCUa-GCCCGGGaaGGC- -5'
23807 5' -62.6 NC_005261.1 + 20456 0.68 0.51035
Target:  5'- gUGCcCGCGCGGGUguGGCgCUUCCu -3'
miRNA:   3'- gACGcGCGCGCCUAgcCCGgGAAGGc -5'
23807 5' -62.6 NC_005261.1 + 21196 0.66 0.606319
Target:  5'- -aGCGCGgcCGCGGAcgCuGGCCCcggCCGc -3'
miRNA:   3'- gaCGCGC--GCGCCUa-GcCCGGGaa-GGC- -5'
23807 5' -62.6 NC_005261.1 + 21766 0.68 0.463823
Target:  5'- -cGCGCGCcgggcgagccgccGCGGcgCGGGCCg--CCGc -3'
miRNA:   3'- gaCGCGCG-------------CGCCuaGCCCGGgaaGGC- -5'
23807 5' -62.6 NC_005261.1 + 21833 0.76 0.159557
Target:  5'- -cGCGCGUGCGGG-CGGGCUCgccCCGc -3'
miRNA:   3'- gaCGCGCGCGCCUaGCCCGGGaa-GGC- -5'
23807 5' -62.6 NC_005261.1 + 23486 0.67 0.548155
Target:  5'- gUGCGCGgGCccgccugggcaGGcgCGGGCCCUg--- -3'
miRNA:   3'- gACGCGCgCG-----------CCuaGCCCGGGAaggc -5'
23807 5' -62.6 NC_005261.1 + 23629 0.66 0.596545
Target:  5'- -gGCGCgGCGgGGGUCGGGCgg--CUGg -3'
miRNA:   3'- gaCGCG-CGCgCCUAGCCCGggaaGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.