miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23807 5' -62.6 NC_005261.1 + 137755 0.71 0.332102
Target:  5'- -gGCGCGCGCGGGggcggggUgcggggcgcgccccCGGGCCCcgCCGc -3'
miRNA:   3'- gaCGCGCGCGCCU-------A--------------GCCCGGGaaGGC- -5'
23807 5' -62.6 NC_005261.1 + 135652 0.66 0.606319
Target:  5'- cCUGCGCggGCGCGGG-CGG-CCCUcgCuCGa -3'
miRNA:   3'- -GACGCG--CGCGCCUaGCCcGGGAa-G-GC- -5'
23807 5' -62.6 NC_005261.1 + 135001 0.67 0.567392
Target:  5'- -gGCGCcccugGCGCGG--CGGGCCCgcacgcggCCGc -3'
miRNA:   3'- gaCGCG-----CGCGCCuaGCCCGGGaa------GGC- -5'
23807 5' -62.6 NC_005261.1 + 134204 0.67 0.567392
Target:  5'- -gGCucgGCGCGCGGGUCGcGGCgg--CCGg -3'
miRNA:   3'- gaCG---CGCGCGCCUAGC-CCGggaaGGC- -5'
23807 5' -62.6 NC_005261.1 + 133944 0.66 0.606319
Target:  5'- cCUGCGCcagGCGCGGcgCauguucGGCCUUUgCCGc -3'
miRNA:   3'- -GACGCG---CGCGCCuaGc-----CCGGGAA-GGC- -5'
23807 5' -62.6 NC_005261.1 + 132179 0.69 0.454077
Target:  5'- -aGCGCGgGCGG---GGGCCCgcauugcuugggUCCGg -3'
miRNA:   3'- gaCGCGCgCGCCuagCCCGGGa-----------AGGC- -5'
23807 5' -62.6 NC_005261.1 + 131930 0.75 0.180131
Target:  5'- -gGCGCGCGCGGGaccgCGGuGCCCgcgcCCGu -3'
miRNA:   3'- gaCGCGCGCGCCUa---GCC-CGGGaa--GGC- -5'
23807 5' -62.6 NC_005261.1 + 130851 0.68 0.464714
Target:  5'- uUGCGCGCGCGcccGGcCGGGCgCCgcggCCu -3'
miRNA:   3'- gACGCGCGCGC---CUaGCCCG-GGaa--GGc -5'
23807 5' -62.6 NC_005261.1 + 129616 0.66 0.586795
Target:  5'- -cGCG-GCG-GGGUCGGGCgCCUUUg- -3'
miRNA:   3'- gaCGCgCGCgCCUAGCCCG-GGAAGgc -5'
23807 5' -62.6 NC_005261.1 + 129366 0.69 0.412909
Target:  5'- --cCGCGCGCGGGucgcgcggcuUCGGGUCCa-CCGg -3'
miRNA:   3'- gacGCGCGCGCCU----------AGCCCGGGaaGGC- -5'
23807 5' -62.6 NC_005261.1 + 128110 0.71 0.342275
Target:  5'- -gGCGCgGCGCgGGGUCGGGCCgagUgCGg -3'
miRNA:   3'- gaCGCG-CGCG-CCUAGCCCGGga-AgGC- -5'
23807 5' -62.6 NC_005261.1 + 127887 0.69 0.438374
Target:  5'- -cGCGCcgGCGCccGUCGGGCCCgggCCu -3'
miRNA:   3'- gaCGCG--CGCGccUAGCCCGGGaa-GGc -5'
23807 5' -62.6 NC_005261.1 + 125298 0.66 0.596545
Target:  5'- -cGCGgGCGcCGGAcccgCGGGCgCU-CCGc -3'
miRNA:   3'- gaCGCgCGC-GCCUa---GCCCGgGAaGGC- -5'
23807 5' -62.6 NC_005261.1 + 124941 0.67 0.567392
Target:  5'- -cGCGCGCGCuGugcCGGcGCCCUggagcCCGc -3'
miRNA:   3'- gaCGCGCGCGcCua-GCC-CGGGAa----GGC- -5'
23807 5' -62.6 NC_005261.1 + 119065 0.67 0.538613
Target:  5'- -cGCGCGUGUGcuuUCGuGGCCCgggCCa -3'
miRNA:   3'- gaCGCGCGCGCcu-AGC-CCGGGaa-GGc -5'
23807 5' -62.6 NC_005261.1 + 118987 0.66 0.606319
Target:  5'- gCUGUGCuucuGCGuCGGGgccugcUGGGCCCgcgCCGa -3'
miRNA:   3'- -GACGCG----CGC-GCCUa-----GCCCGGGaa-GGC- -5'
23807 5' -62.6 NC_005261.1 + 118845 0.68 0.51035
Target:  5'- uCUGCG-GCGCGGAgggCGGcgcGCCCgcggCCc -3'
miRNA:   3'- -GACGCgCGCGCCUa--GCC---CGGGaa--GGc -5'
23807 5' -62.6 NC_005261.1 + 118574 0.66 0.625913
Target:  5'- -cGCGCGCGCGG--CGGcGCgCgccgCCGc -3'
miRNA:   3'- gaCGCGCGCGCCuaGCC-CGgGaa--GGC- -5'
23807 5' -62.6 NC_005261.1 + 116480 0.67 0.529129
Target:  5'- -gGCGCGgGCGGggCGGGCgCg--CGg -3'
miRNA:   3'- gaCGCGCgCGCCuaGCCCGgGaagGC- -5'
23807 5' -62.6 NC_005261.1 + 116159 0.67 0.519706
Target:  5'- -aGCaGCGCGCGG-UCGcGGCCgCgUCCc -3'
miRNA:   3'- gaCG-CGCGCGCCuAGC-CCGG-GaAGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.