Results 1 - 20 of 115 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23807 | 5' | -62.6 | NC_005261.1 | + | 137755 | 0.71 | 0.332102 |
Target: 5'- -gGCGCGCGCGGGggcggggUgcggggcgcgccccCGGGCCCcgCCGc -3' miRNA: 3'- gaCGCGCGCGCCU-------A--------------GCCCGGGaaGGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 135652 | 0.66 | 0.606319 |
Target: 5'- cCUGCGCggGCGCGGG-CGG-CCCUcgCuCGa -3' miRNA: 3'- -GACGCG--CGCGCCUaGCCcGGGAa-G-GC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 135001 | 0.67 | 0.567392 |
Target: 5'- -gGCGCcccugGCGCGG--CGGGCCCgcacgcggCCGc -3' miRNA: 3'- gaCGCG-----CGCGCCuaGCCCGGGaa------GGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 134204 | 0.67 | 0.567392 |
Target: 5'- -gGCucgGCGCGCGGGUCGcGGCgg--CCGg -3' miRNA: 3'- gaCG---CGCGCGCCUAGC-CCGggaaGGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 133944 | 0.66 | 0.606319 |
Target: 5'- cCUGCGCcagGCGCGGcgCauguucGGCCUUUgCCGc -3' miRNA: 3'- -GACGCG---CGCGCCuaGc-----CCGGGAA-GGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 132179 | 0.69 | 0.454077 |
Target: 5'- -aGCGCGgGCGG---GGGCCCgcauugcuugggUCCGg -3' miRNA: 3'- gaCGCGCgCGCCuagCCCGGGa-----------AGGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 131930 | 0.75 | 0.180131 |
Target: 5'- -gGCGCGCGCGGGaccgCGGuGCCCgcgcCCGu -3' miRNA: 3'- gaCGCGCGCGCCUa---GCC-CGGGaa--GGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 130851 | 0.68 | 0.464714 |
Target: 5'- uUGCGCGCGCGcccGGcCGGGCgCCgcggCCu -3' miRNA: 3'- gACGCGCGCGC---CUaGCCCG-GGaa--GGc -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 129616 | 0.66 | 0.586795 |
Target: 5'- -cGCG-GCG-GGGUCGGGCgCCUUUg- -3' miRNA: 3'- gaCGCgCGCgCCUAGCCCG-GGAAGgc -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 129366 | 0.69 | 0.412909 |
Target: 5'- --cCGCGCGCGGGucgcgcggcuUCGGGUCCa-CCGg -3' miRNA: 3'- gacGCGCGCGCCU----------AGCCCGGGaaGGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 128110 | 0.71 | 0.342275 |
Target: 5'- -gGCGCgGCGCgGGGUCGGGCCgagUgCGg -3' miRNA: 3'- gaCGCG-CGCG-CCUAGCCCGGga-AgGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 127887 | 0.69 | 0.438374 |
Target: 5'- -cGCGCcgGCGCccGUCGGGCCCgggCCu -3' miRNA: 3'- gaCGCG--CGCGccUAGCCCGGGaa-GGc -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 125298 | 0.66 | 0.596545 |
Target: 5'- -cGCGgGCGcCGGAcccgCGGGCgCU-CCGc -3' miRNA: 3'- gaCGCgCGC-GCCUa---GCCCGgGAaGGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 124941 | 0.67 | 0.567392 |
Target: 5'- -cGCGCGCGCuGugcCGGcGCCCUggagcCCGc -3' miRNA: 3'- gaCGCGCGCGcCua-GCC-CGGGAa----GGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 119065 | 0.67 | 0.538613 |
Target: 5'- -cGCGCGUGUGcuuUCGuGGCCCgggCCa -3' miRNA: 3'- gaCGCGCGCGCcu-AGC-CCGGGaa-GGc -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 118987 | 0.66 | 0.606319 |
Target: 5'- gCUGUGCuucuGCGuCGGGgccugcUGGGCCCgcgCCGa -3' miRNA: 3'- -GACGCG----CGC-GCCUa-----GCCCGGGaa-GGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 118845 | 0.68 | 0.51035 |
Target: 5'- uCUGCG-GCGCGGAgggCGGcgcGCCCgcggCCc -3' miRNA: 3'- -GACGCgCGCGCCUa--GCC---CGGGaa--GGc -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 118574 | 0.66 | 0.625913 |
Target: 5'- -cGCGCGCGCGG--CGGcGCgCgccgCCGc -3' miRNA: 3'- gaCGCGCGCGCCuaGCC-CGgGaa--GGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 116480 | 0.67 | 0.529129 |
Target: 5'- -gGCGCGgGCGGggCGGGCgCg--CGg -3' miRNA: 3'- gaCGCGCgCGCCuaGCCCGgGaagGC- -5' |
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23807 | 5' | -62.6 | NC_005261.1 | + | 116159 | 0.67 | 0.519706 |
Target: 5'- -aGCaGCGCGCGG-UCGcGGCCgCgUCCc -3' miRNA: 3'- gaCG-CGCGCGCCuAGC-CCGG-GaAGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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