miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23807 5' -62.6 NC_005261.1 + 118574 0.66 0.625913
Target:  5'- -cGCGCGCGCGG--CGGcGCgCgccgCCGc -3'
miRNA:   3'- gaCGCGCGCGCCuaGCC-CGgGaa--GGC- -5'
23807 5' -62.6 NC_005261.1 + 59571 0.66 0.596545
Target:  5'- -cGCGCGCGCGccgcagCGGGUgCCgcgCCGc -3'
miRNA:   3'- gaCGCGCGCGCcua---GCCCG-GGaa-GGC- -5'
23807 5' -62.6 NC_005261.1 + 97180 0.66 0.577076
Target:  5'- -cGCGgGCGCcGGcCGGGCCgCggCCGg -3'
miRNA:   3'- gaCGCgCGCGcCUaGCCCGG-GaaGGC- -5'
23807 5' -62.6 NC_005261.1 + 129616 0.66 0.586795
Target:  5'- -cGCG-GCG-GGGUCGGGCgCCUUUg- -3'
miRNA:   3'- gaCGCgCGCgCCUAGCCCG-GGAAGgc -5'
23807 5' -62.6 NC_005261.1 + 38731 0.66 0.586795
Target:  5'- -aGCGCcCGCaGAgccCGGGCCCgcgCCa -3'
miRNA:   3'- gaCGCGcGCGcCUa--GCCCGGGaa-GGc -5'
23807 5' -62.6 NC_005261.1 + 74070 0.66 0.590692
Target:  5'- gCUGCGCGaCGCGGccCGGcuugugcgcgaccucGCCCccCCGg -3'
miRNA:   3'- -GACGCGC-GCGCCuaGCC---------------CGGGaaGGC- -5'
23807 5' -62.6 NC_005261.1 + 59961 0.66 0.577076
Target:  5'- -gGCGCGCGUgaacGGGUCGaagaaGGCgCCgUCCGc -3'
miRNA:   3'- gaCGCGCGCG----CCUAGC-----CCG-GGaAGGC- -5'
23807 5' -62.6 NC_005261.1 + 52801 0.66 0.586795
Target:  5'- uUGCGUGcCGCGGGUUggcaaacagGGGCgCUUCg- -3'
miRNA:   3'- gACGCGC-GCGCCUAG---------CCCGgGAAGgc -5'
23807 5' -62.6 NC_005261.1 + 74349 0.66 0.596545
Target:  5'- -gGCGCgGCgGCGGAagGGGCggCCgcgUCCGc -3'
miRNA:   3'- gaCGCG-CG-CGCCUagCCCG--GGa--AGGC- -5'
23807 5' -62.6 NC_005261.1 + 17914 0.66 0.595569
Target:  5'- -gGCGCcgauuaGCaGCGaGUCGGGCCCgcuggcgUUCCGg -3'
miRNA:   3'- gaCGCG------CG-CGCcUAGCCCGGG-------AAGGC- -5'
23807 5' -62.6 NC_005261.1 + 28776 0.66 0.586795
Target:  5'- cCUGgGC-CGCGGcgCGGGCgCUcgcggCCGc -3'
miRNA:   3'- -GACgCGcGCGCCuaGCCCGgGAa----GGC- -5'
23807 5' -62.6 NC_005261.1 + 58490 0.66 0.596545
Target:  5'- -gGCcgGCGCGCGGccgcuuUUGGcGCCCgcgUCCa -3'
miRNA:   3'- gaCG--CGCGCGCCu-----AGCC-CGGGa--AGGc -5'
23807 5' -62.6 NC_005261.1 + 68972 0.66 0.577076
Target:  5'- gUGCGCGCcaccGCGGcccuuuUCGGGCCgCgcgggcgCCGc -3'
miRNA:   3'- gACGCGCG----CGCCu-----AGCCCGG-Gaa-----GGC- -5'
23807 5' -62.6 NC_005261.1 + 29409 0.66 0.586795
Target:  5'- -cGCGCGCuacgcgGCGGccgCGGGgCCCgcggCCGu -3'
miRNA:   3'- gaCGCGCG------CGCCua-GCCC-GGGaa--GGC- -5'
23807 5' -62.6 NC_005261.1 + 4530 0.66 0.577076
Target:  5'- -gGCGC-CGCGGcgagggcgcCGGGCCCUggCCu -3'
miRNA:   3'- gaCGCGcGCGCCua-------GCCCGGGAa-GGc -5'
23807 5' -62.6 NC_005261.1 + 105299 0.66 0.596545
Target:  5'- -cGgGCGCGCGaGcgCgGGGUCCUcgcacUCCGc -3'
miRNA:   3'- gaCgCGCGCGC-CuaG-CCCGGGA-----AGGC- -5'
23807 5' -62.6 NC_005261.1 + 98273 0.66 0.596545
Target:  5'- -gGCGCGCGCGu-UCGacGCCCggcgcgUCCGc -3'
miRNA:   3'- gaCGCGCGCGCcuAGCc-CGGGa-----AGGC- -5'
23807 5' -62.6 NC_005261.1 + 125298 0.66 0.596545
Target:  5'- -cGCGgGCGcCGGAcccgCGGGCgCU-CCGc -3'
miRNA:   3'- gaCGCgCGC-GCCUa---GCCCGgGAaGGC- -5'
23807 5' -62.6 NC_005261.1 + 94996 0.66 0.586795
Target:  5'- -cGCGCGCcccgcccuGCGGggCGGGCUauaaagCCGc -3'
miRNA:   3'- gaCGCGCG--------CGCCuaGCCCGGgaa---GGC- -5'
23807 5' -62.6 NC_005261.1 + 14457 0.66 0.586795
Target:  5'- -gGCGCGCgGCGGAgcUCGcgcuGGUCCU-CCa -3'
miRNA:   3'- gaCGCGCG-CGCCU--AGC----CCGGGAaGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.