miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23807 5' -62.6 NC_005261.1 + 73739 0.72 0.274522
Target:  5'- uUGCGCGCGgGGGUcCGGuGCCaCggCCGc -3'
miRNA:   3'- gACGCGCGCgCCUA-GCC-CGG-GaaGGC- -5'
23807 5' -62.6 NC_005261.1 + 118574 0.66 0.625913
Target:  5'- -cGCGCGCGCGG--CGGcGCgCgccgCCGc -3'
miRNA:   3'- gaCGCGCGCGCCuaGCC-CGgGaa--GGC- -5'
23807 5' -62.6 NC_005261.1 + 72 0.71 0.332102
Target:  5'- -gGCGCGCGCGGGggcggggUgcggggcgcgccccCGGGCCCcgCCGc -3'
miRNA:   3'- gaCGCGCGCGCCU-------A--------------GCCCGGGaaGGC- -5'
23807 5' -62.6 NC_005261.1 + 77041 0.71 0.3271
Target:  5'- -cGCGCGCGCGGcccUCGGcgaccgcGCCUggCCGg -3'
miRNA:   3'- gaCGCGCGCGCCu--AGCC-------CGGGaaGGC- -5'
23807 5' -62.6 NC_005261.1 + 86897 0.71 0.32075
Target:  5'- cCUGgucCGCGCGCGGcgCGGaCCCgcgUCCa -3'
miRNA:   3'- -GAC---GCGCGCGCCuaGCCcGGGa--AGGc -5'
23807 5' -62.6 NC_005261.1 + 79064 0.71 0.32075
Target:  5'- -aGCGCGCGCGugguGAUCGGGUacagcgCCUUCa- -3'
miRNA:   3'- gaCGCGCGCGC----CUAGCCCG------GGAAGgc -5'
23807 5' -62.6 NC_005261.1 + 28898 0.71 0.319351
Target:  5'- cCUGCGCccaaCGCGGAggaaguugacgcCGGGCCCgaggCCGa -3'
miRNA:   3'- -GACGCGc---GCGCCUa-----------GCCCGGGaa--GGC- -5'
23807 5' -62.6 NC_005261.1 + 19752 0.71 0.313804
Target:  5'- -cGCGCucccGCGCGGGcgCGGGCCCcgUCGc -3'
miRNA:   3'- gaCGCG----CGCGCCUa-GCCCGGGaaGGC- -5'
23807 5' -62.6 NC_005261.1 + 105117 0.71 0.313804
Target:  5'- uUGCcCGCGCGGGcgCGGGCCg--CCGg -3'
miRNA:   3'- gACGcGCGCGCCUa-GCCCGGgaaGGC- -5'
23807 5' -62.6 NC_005261.1 + 44267 0.72 0.293651
Target:  5'- -gGCGCGCGgGGGggcgGGGCCCgccgCCa -3'
miRNA:   3'- gaCGCGCGCgCCUag--CCCGGGaa--GGc -5'
23807 5' -62.6 NC_005261.1 + 68273 0.72 0.287161
Target:  5'- cCUGCGCccGCGCGGcg-GGGCCCcggCCGc -3'
miRNA:   3'- -GACGCG--CGCGCCuagCCCGGGaa-GGC- -5'
23807 5' -62.6 NC_005261.1 + 45621 0.77 0.137682
Target:  5'- -gGCGCgGCGCGGcgcggCGGGCCCgcgCCGg -3'
miRNA:   3'- gaCGCG-CGCGCCua---GCCCGGGaa-GGC- -5'
23807 5' -62.6 NC_005261.1 + 95707 0.72 0.273902
Target:  5'- --aUGCGCGCGGGcucgcgcUCGGGCCCg-CCGc -3'
miRNA:   3'- gacGCGCGCGCCU-------AGCCCGGGaaGGC- -5'
23807 5' -62.6 NC_005261.1 + 62527 0.73 0.268372
Target:  5'- -gGCGcCGCGCGGcaUGGGCCCcacgCCGa -3'
miRNA:   3'- gaCGC-GCGCGCCuaGCCCGGGaa--GGC- -5'
23807 5' -62.6 NC_005261.1 + 93909 0.73 0.262333
Target:  5'- aCUGCGgGCGCGGcgcccgCGGGCUUgcgCCGu -3'
miRNA:   3'- -GACGCgCGCGCCua----GCCCGGGaa-GGC- -5'
23807 5' -62.6 NC_005261.1 + 67066 0.73 0.255818
Target:  5'- -gGCGCGCGCGGGggcucgcUCGGGCgg-UCCa -3'
miRNA:   3'- gaCGCGCGCGCCU-------AGCCCGggaAGGc -5'
23807 5' -62.6 NC_005261.1 + 92163 0.73 0.233785
Target:  5'- -aGCGCGCGCucgguGGAgccgcCGGGCCCgacgCCGc -3'
miRNA:   3'- gaCGCGCGCG-----CCUa----GCCCGGGaa--GGC- -5'
23807 5' -62.6 NC_005261.1 + 92313 0.74 0.228399
Target:  5'- -aGCGcCGCGCGGuccgCGcGGCCCaUCCGc -3'
miRNA:   3'- gaCGC-GCGCGCCua--GC-CCGGGaAGGC- -5'
23807 5' -62.6 NC_005261.1 + 131930 0.75 0.180131
Target:  5'- -gGCGCGCGCGGGaccgCGGuGCCCgcgcCCGu -3'
miRNA:   3'- gaCGCGCGCGCCUa---GCC-CGGGaa--GGC- -5'
23807 5' -62.6 NC_005261.1 + 21833 0.76 0.159557
Target:  5'- -cGCGCGUGCGGG-CGGGCUCgccCCGc -3'
miRNA:   3'- gaCGCGCGCGCCUaGCCCGGGaa-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.