miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23808 3' -54.4 NC_005261.1 + 4528 0.68 0.874605
Target:  5'- cGGGCGCCGcggCGAGggcgcCGGGCccUGGCCu -3'
miRNA:   3'- -CUUGCGGCa--GCUCaa---GCUCG--ACUGGu -5'
23808 3' -54.4 NC_005261.1 + 16294 0.69 0.809175
Target:  5'- gGGGCGCCGUCGGGcccagCG-GC-GGCCGg -3'
miRNA:   3'- -CUUGCGGCAGCUCaa---GCuCGaCUGGU- -5'
23808 3' -54.4 NC_005261.1 + 22709 0.67 0.908479
Target:  5'- cGAgGCCGUCGAG---GAGCcggagGACCAg -3'
miRNA:   3'- cUUgCGGCAGCUCaagCUCGa----CUGGU- -5'
23808 3' -54.4 NC_005261.1 + 23556 0.69 0.809175
Target:  5'- ---aGCCGUCGcaGGUggggcaGGGCUGGCCGu -3'
miRNA:   3'- cuugCGGCAGC--UCAag----CUCGACUGGU- -5'
23808 3' -54.4 NC_005261.1 + 27795 0.72 0.672234
Target:  5'- --uUGCCGUCGAG--CGAGCUaGCCAg -3'
miRNA:   3'- cuuGCGGCAGCUCaaGCUCGAcUGGU- -5'
23808 3' -54.4 NC_005261.1 + 28588 0.7 0.800167
Target:  5'- cGAGCGCCGgCGGGccgcccgcgcCGAGCUGGCgGa -3'
miRNA:   3'- -CUUGCGGCaGCUCaa--------GCUCGACUGgU- -5'
23808 3' -54.4 NC_005261.1 + 30889 0.66 0.936317
Target:  5'- --cUGCCGccCGAGcUCGGGCUGggGCCGc -3'
miRNA:   3'- cuuGCGGCa-GCUCaAGCUCGAC--UGGU- -5'
23808 3' -54.4 NC_005261.1 + 31443 0.66 0.929671
Target:  5'- cGGCGCCGcccggCGAGgaCGAGCgccggcggccugagUGGCCGc -3'
miRNA:   3'- cUUGCGGCa----GCUCaaGCUCG--------------ACUGGU- -5'
23808 3' -54.4 NC_005261.1 + 31651 0.69 0.809175
Target:  5'- cGGCGCgGUCGAGUaccucugccugCG-GCUGGCCGc -3'
miRNA:   3'- cUUGCGgCAGCUCAa----------GCuCGACUGGU- -5'
23808 3' -54.4 NC_005261.1 + 34298 0.69 0.818018
Target:  5'- gGGACGCCGggagCGAGaccgaCGGGgaGGCCGa -3'
miRNA:   3'- -CUUGCGGCa---GCUCaa---GCUCgaCUGGU- -5'
23808 3' -54.4 NC_005261.1 + 35303 0.71 0.703017
Target:  5'- aGAGCGCCGggcCGGGcugcUCGGGgaGGCCGg -3'
miRNA:   3'- -CUUGCGGCa--GCUCa---AGCUCgaCUGGU- -5'
23808 3' -54.4 NC_005261.1 + 40676 0.72 0.682541
Target:  5'- cGACGCCGUCGGGgagcCGGcGCcGGCCGg -3'
miRNA:   3'- cUUGCGGCAGCUCaa--GCU-CGaCUGGU- -5'
23808 3' -54.4 NC_005261.1 + 44870 0.67 0.895635
Target:  5'- aGAGCGCCGccgCGAGcgccgCGGGgaUGGCCGg -3'
miRNA:   3'- -CUUGCGGCa--GCUCaa---GCUCg-ACUGGU- -5'
23808 3' -54.4 NC_005261.1 + 44968 0.66 0.92592
Target:  5'- gGGACGCgCG-CGAGggccCGGGCgGGCCGc -3'
miRNA:   3'- -CUUGCG-GCaGCUCaa--GCUCGaCUGGU- -5'
23808 3' -54.4 NC_005261.1 + 53881 0.72 0.692805
Target:  5'- -cGCGCUGUCGAG-UCGAaGCgGGCCc -3'
miRNA:   3'- cuUGCGGCAGCUCaAGCU-CGaCUGGu -5'
23808 3' -54.4 NC_005261.1 + 58560 0.67 0.919208
Target:  5'- -uGCGCCGUCGuGgccgcgagcggCGAGCgcgaGACCu -3'
miRNA:   3'- cuUGCGGCAGCuCaa---------GCUCGa---CUGGu -5'
23808 3' -54.4 NC_005261.1 + 68098 0.68 0.888856
Target:  5'- gGGAgGCCGUgaAGUUCGGGCUGgaGCUg -3'
miRNA:   3'- -CUUgCGGCAgcUCAAGCUCGAC--UGGu -5'
23808 3' -54.4 NC_005261.1 + 68898 0.72 0.682541
Target:  5'- cGGACGCCGUCGuccugaaGAGC-GACCAc -3'
miRNA:   3'- -CUUGCGGCAGCucaag--CUCGaCUGGU- -5'
23808 3' -54.4 NC_005261.1 + 71676 0.69 0.809175
Target:  5'- -uGCGCaCGUCGGcGUcugCGGGCgUGACCAu -3'
miRNA:   3'- cuUGCG-GCAGCU-CAa--GCUCG-ACUGGU- -5'
23808 3' -54.4 NC_005261.1 + 72464 0.72 0.672234
Target:  5'- cGAGCGCgG-CGAGcgCGAGCgcGGCCAg -3'
miRNA:   3'- -CUUGCGgCaGCUCaaGCUCGa-CUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.