miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23808 3' -54.4 NC_005261.1 + 73230 0.66 0.936317
Target:  5'- cGGugGCCG-CGAGcgCGAGCaGGuCCu -3'
miRNA:   3'- -CUugCGGCaGCUCaaGCUCGaCU-GGu -5'
23808 3' -54.4 NC_005261.1 + 76651 0.67 0.920351
Target:  5'- cGAGCGCCuG-CGAGgUCGGcgccguGCUGGCCc -3'
miRNA:   3'- -CUUGCGG-CaGCUCaAGCU------CGACUGGu -5'
23808 3' -54.4 NC_005261.1 + 81201 0.68 0.881845
Target:  5'- ---gGCCGcgCGGGcgCGAGCcgGACCAc -3'
miRNA:   3'- cuugCGGCa-GCUCaaGCUCGa-CUGGU- -5'
23808 3' -54.4 NC_005261.1 + 82670 0.66 0.945734
Target:  5'- uGAGCGCC-UCGAGccgcucgUCGGGCgccACCGc -3'
miRNA:   3'- -CUUGCGGcAGCUCa------AGCUCGac-UGGU- -5'
23808 3' -54.4 NC_005261.1 + 85562 0.66 0.936317
Target:  5'- cGGCGCCG-CGAgGUUCGGcGCcgcGACCGc -3'
miRNA:   3'- cUUGCGGCaGCU-CAAGCU-CGa--CUGGU- -5'
23808 3' -54.4 NC_005261.1 + 85804 0.73 0.62037
Target:  5'- aGACgGCCGUCGAGUaCGGGUccaGGCCAg -3'
miRNA:   3'- cUUG-CGGCAGCUCAaGCUCGa--CUGGU- -5'
23808 3' -54.4 NC_005261.1 + 87127 0.66 0.931242
Target:  5'- aAGgGCCG-CGGGUacgCGAGCUGcucGCCGa -3'
miRNA:   3'- cUUgCGGCaGCUCAa--GCUCGAC---UGGU- -5'
23808 3' -54.4 NC_005261.1 + 87410 0.67 0.920351
Target:  5'- cGGCGCCGUCGA---CGGGCgcGCCGg -3'
miRNA:   3'- cUUGCGGCAGCUcaaGCUCGacUGGU- -5'
23808 3' -54.4 NC_005261.1 + 89450 0.71 0.727257
Target:  5'- --cCGCCGUgcuggaguuugacagCGAGUUCGAGCUGcuGCUg -3'
miRNA:   3'- cuuGCGGCA---------------GCUCAAGCUCGAC--UGGu -5'
23808 3' -54.4 NC_005261.1 + 90243 0.7 0.791002
Target:  5'- -cGCGCCGUCGGGUaUCaGGGC--GCCAa -3'
miRNA:   3'- cuUGCGGCAGCUCA-AG-CUCGacUGGU- -5'
23808 3' -54.4 NC_005261.1 + 104174 0.69 0.826686
Target:  5'- cGGGCGCCGcgcgCGGGUcgUCGGGCggGACg- -3'
miRNA:   3'- -CUUGCGGCa---GCUCA--AGCUCGa-CUGgu -5'
23808 3' -54.4 NC_005261.1 + 105377 0.69 0.818018
Target:  5'- cGGCGCgCG-CGGGUgCGcGCUGACCAc -3'
miRNA:   3'- cUUGCG-GCaGCUCAaGCuCGACUGGU- -5'
23808 3' -54.4 NC_005261.1 + 105527 0.66 0.92592
Target:  5'- -cGCGCCcgcccacCGGGacUCGGGCUGGCCGc -3'
miRNA:   3'- cuUGCGGca-----GCUCa-AGCUCGACUGGU- -5'
23808 3' -54.4 NC_005261.1 + 118922 0.69 0.835172
Target:  5'- cGGCGCCG-CGGGcgCGgcgccgcgcGGCUGGCCGc -3'
miRNA:   3'- cUUGCGGCaGCUCaaGC---------UCGACUGGU- -5'
23808 3' -54.4 NC_005261.1 + 121132 0.66 0.941148
Target:  5'- aGGCGCgGgcgCGAGcgCGAGUagGACCGg -3'
miRNA:   3'- cUUGCGgCa--GCUCaaGCUCGa-CUGGU- -5'
23808 3' -54.4 NC_005261.1 + 121646 0.71 0.743154
Target:  5'- --cCGCCGgCGAGcgCGGGCUGuCCGc -3'
miRNA:   3'- cuuGCGGCaGCUCaaGCUCGACuGGU- -5'
23808 3' -54.4 NC_005261.1 + 121769 0.68 0.887473
Target:  5'- cGAGCGCgGUgGGGUggccgcggccggCGGGCUGGgCAg -3'
miRNA:   3'- -CUUGCGgCAgCUCAa-----------GCUCGACUgGU- -5'
23808 3' -54.4 NC_005261.1 + 133212 0.82 0.199898
Target:  5'- cGACGCCGUCGAGgcCGAGCUGggGCCc -3'
miRNA:   3'- cUUGCGGCAGCUCaaGCUCGAC--UGGu -5'
23808 3' -54.4 NC_005261.1 + 137032 0.68 0.867141
Target:  5'- aGAACGgCGUCG-GUggaGGGCgGACCGu -3'
miRNA:   3'- -CUUGCgGCAGCuCAag-CUCGaCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.