miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23810 5' -61.9 NC_005261.1 + 31836 0.66 0.616005
Target:  5'- uGGCGCGCgccgugcuggCCUCGCgGCgcgucuucgGGCCCggcgCCu -3'
miRNA:   3'- -CUGCGCGa---------GGAGCGaCG---------UCGGGa---GGu -5'
23810 5' -61.9 NC_005261.1 + 102900 0.7 0.360011
Target:  5'- -cCGCGCcCCUgGCccGCAGCgCCUCCGc -3'
miRNA:   3'- cuGCGCGaGGAgCGa-CGUCG-GGAGGU- -5'
23810 5' -61.9 NC_005261.1 + 95036 0.7 0.360011
Target:  5'- cGGCgGCGCUCggCGCcGCAgaccGCCCUCCGc -3'
miRNA:   3'- -CUG-CGCGAGgaGCGaCGU----CGGGAGGU- -5'
23810 5' -61.9 NC_005261.1 + 103210 0.7 0.367853
Target:  5'- cGGCGC-CUCCUgcaggaagCGCgcGCAGUCCUCCGc -3'
miRNA:   3'- -CUGCGcGAGGA--------GCGa-CGUCGGGAGGU- -5'
23810 5' -61.9 NC_005261.1 + 80870 0.7 0.375811
Target:  5'- aGGCGCGCUCagccgCGCgggcuucaGCGGCgCCUCCc -3'
miRNA:   3'- -CUGCGCGAGga---GCGa-------CGUCG-GGAGGu -5'
23810 5' -61.9 NC_005261.1 + 101900 0.7 0.383071
Target:  5'- cGCGCGCUCCUCcucgaaaGCcGCGuGCCC-CCGg -3'
miRNA:   3'- cUGCGCGAGGAG-------CGaCGU-CGGGaGGU- -5'
23810 5' -61.9 NC_005261.1 + 11966 0.7 0.383884
Target:  5'- cGCGCGCUCCagCGCaGCAGCCgCgugUCGa -3'
miRNA:   3'- cUGCGCGAGGa-GCGaCGUCGG-Ga--GGU- -5'
23810 5' -61.9 NC_005261.1 + 105924 0.7 0.383884
Target:  5'- cGCGCGC-CCaCGCcGC-GCCCUCCGc -3'
miRNA:   3'- cUGCGCGaGGaGCGaCGuCGGGAGGU- -5'
23810 5' -61.9 NC_005261.1 + 57597 0.69 0.390425
Target:  5'- cGAUGUGCcaCCUgGCggcgcacgccgcGCAGCCCUCCGg -3'
miRNA:   3'- -CUGCGCGa-GGAgCGa-----------CGUCGGGAGGU- -5'
23810 5' -61.9 NC_005261.1 + 19750 0.7 0.357682
Target:  5'- cACGCGCUCCcgCGCgggcgcgggccccgUcgccucgaacacGCGGCCCUCCGa -3'
miRNA:   3'- cUGCGCGAGGa-GCG--------------A------------CGUCGGGAGGU- -5'
23810 5' -61.9 NC_005261.1 + 83505 0.7 0.352287
Target:  5'- aGGCGCGCgcgCCgguggaaGCgGCAcgcGCCCUCCAg -3'
miRNA:   3'- -CUGCGCGa--GGag-----CGaCGU---CGGGAGGU- -5'
23810 5' -61.9 NC_005261.1 + 56189 0.7 0.344682
Target:  5'- cGACGCGCgggcucccuUCCUCGaCUucgccgucGCGGCCC-CCAa -3'
miRNA:   3'- -CUGCGCG---------AGGAGC-GA--------CGUCGGGaGGU- -5'
23810 5' -61.9 NC_005261.1 + 101339 0.74 0.202152
Target:  5'- --aGCGCgCCU-GCUGCAGCCaCUCCAc -3'
miRNA:   3'- cugCGCGaGGAgCGACGUCGG-GAGGU- -5'
23810 5' -61.9 NC_005261.1 + 79895 0.73 0.244852
Target:  5'- gGGCGCGCUCCUUGUuuUGCAGCaggcaCCAg -3'
miRNA:   3'- -CUGCGCGAGGAGCG--ACGUCGgga--GGU- -5'
23810 5' -61.9 NC_005261.1 + 4411 0.73 0.250688
Target:  5'- cGGCGCGCUgccgggccaggCCUCGCcggaggGCgucagcagcgGGCCCUCCAg -3'
miRNA:   3'- -CUGCGCGA-----------GGAGCGa-----CG----------UCGGGAGGU- -5'
23810 5' -61.9 NC_005261.1 + 102394 0.72 0.268883
Target:  5'- cGCGCaGCUCCUCGC-GcCAGCgCUCCu -3'
miRNA:   3'- cUGCG-CGAGGAGCGaC-GUCGgGAGGu -5'
23810 5' -61.9 NC_005261.1 + 84924 0.72 0.281595
Target:  5'- gGGCGgGCcucggCCUCGC-GCAGCaCCUCCu -3'
miRNA:   3'- -CUGCgCGa----GGAGCGaCGUCG-GGAGGu -5'
23810 5' -61.9 NC_005261.1 + 118084 0.71 0.30155
Target:  5'- -cCGCGCUCgUCuGCUgGCGGCCCgCCGc -3'
miRNA:   3'- cuGCGCGAGgAG-CGA-CGUCGGGaGGU- -5'
23810 5' -61.9 NC_005261.1 + 43659 0.71 0.322578
Target:  5'- uGACGUGCUCUUCGagucgcccaUGCAGCggCUCCAc -3'
miRNA:   3'- -CUGCGCGAGGAGCg--------ACGUCGg-GAGGU- -5'
23810 5' -61.9 NC_005261.1 + 60211 0.71 0.322578
Target:  5'- cGCGCGCUCC-CGCcGCGgggcGCCC-CCAg -3'
miRNA:   3'- cUGCGCGAGGaGCGaCGU----CGGGaGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.