miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23810 5' -61.9 NC_005261.1 + 2134 0.66 0.605998
Target:  5'- aGCGCGCUCa-CGUccgGCGcGCCCgUCCAg -3'
miRNA:   3'- cUGCGCGAGgaGCGa--CGU-CGGG-AGGU- -5'
23810 5' -61.9 NC_005261.1 + 2266 0.67 0.536832
Target:  5'- cGGCGCuCgUCCUCGCcggGCGGCgCCgCCAg -3'
miRNA:   3'- -CUGCGcG-AGGAGCGa--CGUCG-GGaGGU- -5'
23810 5' -61.9 NC_005261.1 + 3581 0.69 0.434666
Target:  5'- cGCGCGCUCCacCGCgucGCGGgCCgcgCCAa -3'
miRNA:   3'- cUGCGCGAGGa-GCGa--CGUCgGGa--GGU- -5'
23810 5' -61.9 NC_005261.1 + 4320 0.66 0.616005
Target:  5'- aGCGCGCggccgCCUCGCggaucucgggGCagucccagaGGCCCUCgCGa -3'
miRNA:   3'- cUGCGCGa----GGAGCGa---------CG---------UCGGGAG-GU- -5'
23810 5' -61.9 NC_005261.1 + 4411 0.73 0.250688
Target:  5'- cGGCGCGCUgccgggccaggCCUCGCcggaggGCgucagcagcgGGCCCUCCAg -3'
miRNA:   3'- -CUGCGCGA-----------GGAGCGa-----CG----------UCGGGAGGU- -5'
23810 5' -61.9 NC_005261.1 + 9699 0.67 0.540722
Target:  5'- -cCGCGCUCCgcccccuccccuaGCaGCAGCgCUCCGc -3'
miRNA:   3'- cuGCGCGAGGag-----------CGaCGUCGgGAGGU- -5'
23810 5' -61.9 NC_005261.1 + 10440 0.66 0.616005
Target:  5'- gGACGCGUgCUgggaggcgcUGCUGCAGCUCUCg- -3'
miRNA:   3'- -CUGCGCGaGGa--------GCGACGUCGGGAGgu -5'
23810 5' -61.9 NC_005261.1 + 10505 0.68 0.479821
Target:  5'- uGCGCGCggCCgcCGCUGCGGgCC-CCGc -3'
miRNA:   3'- cUGCGCGa-GGa-GCGACGUCgGGaGGU- -5'
23810 5' -61.9 NC_005261.1 + 10532 0.67 0.556373
Target:  5'- cGGCGCGC---UCGCUGUcGCCC-CCGg -3'
miRNA:   3'- -CUGCGCGaggAGCGACGuCGGGaGGU- -5'
23810 5' -61.9 NC_005261.1 + 11966 0.7 0.383884
Target:  5'- cGCGCGCUCCagCGCaGCAGCCgCgugUCGa -3'
miRNA:   3'- cUGCGCGAGGa-GCGaCGUCGG-Ga--GGU- -5'
23810 5' -61.9 NC_005261.1 + 14456 0.69 0.434666
Target:  5'- gGGCGCGCggcggagCUCGC-GCuGGUCCUCCAa -3'
miRNA:   3'- -CUGCGCGag-----GAGCGaCG-UCGGGAGGU- -5'
23810 5' -61.9 NC_005261.1 + 19750 0.7 0.357682
Target:  5'- cACGCGCUCCcgCGCgggcgcgggccccgUcgccucgaacacGCGGCCCUCCGa -3'
miRNA:   3'- cUGCGCGAGGa-GCG--------------A------------CGUCGGGAGGU- -5'
23810 5' -61.9 NC_005261.1 + 27985 0.68 0.498518
Target:  5'- cGCGCGCUUCUC-CcGcCGGCCuCUCCGc -3'
miRNA:   3'- cUGCGCGAGGAGcGaC-GUCGG-GAGGU- -5'
23810 5' -61.9 NC_005261.1 + 29256 0.68 0.502297
Target:  5'- cGACGgGCcgCCgccgcuggagggccCGCUGCugacGCCCUCCGg -3'
miRNA:   3'- -CUGCgCGa-GGa-------------GCGACGu---CGGGAGGU- -5'
23810 5' -61.9 NC_005261.1 + 30259 0.67 0.507989
Target:  5'- cGACGCGCgg--CGCgGCGGCCCgcgcgCCc -3'
miRNA:   3'- -CUGCGCGaggaGCGaCGUCGGGa----GGu -5'
23810 5' -61.9 NC_005261.1 + 31836 0.66 0.616005
Target:  5'- uGGCGCGCgccgugcuggCCUCGCgGCgcgucuucgGGCCCggcgCCu -3'
miRNA:   3'- -CUGCGCGa---------GGAGCGaCG---------UCGGGa---GGu -5'
23810 5' -61.9 NC_005261.1 + 32561 0.68 0.470602
Target:  5'- cGGCGCGCguggaagugcucUCCUCGUccGC-GUCCUCCGc -3'
miRNA:   3'- -CUGCGCG------------AGGAGCGa-CGuCGGGAGGU- -5'
23810 5' -61.9 NC_005261.1 + 34045 0.66 0.586046
Target:  5'- cGCGCGCUgCCcUGcCUGCAcGCCUUCUg -3'
miRNA:   3'- cUGCGCGA-GGaGC-GACGU-CGGGAGGu -5'
23810 5' -61.9 NC_005261.1 + 39606 0.67 0.546575
Target:  5'- cGCGCGCcCCcgccgcccccgUCGC-GCAGaCCCUCCc -3'
miRNA:   3'- cUGCGCGaGG-----------AGCGaCGUC-GGGAGGu -5'
23810 5' -61.9 NC_005261.1 + 43659 0.71 0.322578
Target:  5'- uGACGUGCUCUUCGagucgcccaUGCAGCggCUCCAc -3'
miRNA:   3'- -CUGCGCGAGGAGCg--------ACGUCGg-GAGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.