Results 1 - 20 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23810 | 5' | -61.9 | NC_005261.1 | + | 2134 | 0.66 | 0.605998 |
Target: 5'- aGCGCGCUCa-CGUccgGCGcGCCCgUCCAg -3' miRNA: 3'- cUGCGCGAGgaGCGa--CGU-CGGG-AGGU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 2266 | 0.67 | 0.536832 |
Target: 5'- cGGCGCuCgUCCUCGCcggGCGGCgCCgCCAg -3' miRNA: 3'- -CUGCGcG-AGGAGCGa--CGUCG-GGaGGU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 3581 | 0.69 | 0.434666 |
Target: 5'- cGCGCGCUCCacCGCgucGCGGgCCgcgCCAa -3' miRNA: 3'- cUGCGCGAGGa-GCGa--CGUCgGGa--GGU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 4320 | 0.66 | 0.616005 |
Target: 5'- aGCGCGCggccgCCUCGCggaucucgggGCagucccagaGGCCCUCgCGa -3' miRNA: 3'- cUGCGCGa----GGAGCGa---------CG---------UCGGGAG-GU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 4411 | 0.73 | 0.250688 |
Target: 5'- cGGCGCGCUgccgggccaggCCUCGCcggaggGCgucagcagcgGGCCCUCCAg -3' miRNA: 3'- -CUGCGCGA-----------GGAGCGa-----CG----------UCGGGAGGU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 9699 | 0.67 | 0.540722 |
Target: 5'- -cCGCGCUCCgcccccuccccuaGCaGCAGCgCUCCGc -3' miRNA: 3'- cuGCGCGAGGag-----------CGaCGUCGgGAGGU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 10440 | 0.66 | 0.616005 |
Target: 5'- gGACGCGUgCUgggaggcgcUGCUGCAGCUCUCg- -3' miRNA: 3'- -CUGCGCGaGGa--------GCGACGUCGGGAGgu -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 10505 | 0.68 | 0.479821 |
Target: 5'- uGCGCGCggCCgcCGCUGCGGgCC-CCGc -3' miRNA: 3'- cUGCGCGa-GGa-GCGACGUCgGGaGGU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 10532 | 0.67 | 0.556373 |
Target: 5'- cGGCGCGC---UCGCUGUcGCCC-CCGg -3' miRNA: 3'- -CUGCGCGaggAGCGACGuCGGGaGGU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 11966 | 0.7 | 0.383884 |
Target: 5'- cGCGCGCUCCagCGCaGCAGCCgCgugUCGa -3' miRNA: 3'- cUGCGCGAGGa-GCGaCGUCGG-Ga--GGU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 14456 | 0.69 | 0.434666 |
Target: 5'- gGGCGCGCggcggagCUCGC-GCuGGUCCUCCAa -3' miRNA: 3'- -CUGCGCGag-----GAGCGaCG-UCGGGAGGU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 19750 | 0.7 | 0.357682 |
Target: 5'- cACGCGCUCCcgCGCgggcgcgggccccgUcgccucgaacacGCGGCCCUCCGa -3' miRNA: 3'- cUGCGCGAGGa-GCG--------------A------------CGUCGGGAGGU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 27985 | 0.68 | 0.498518 |
Target: 5'- cGCGCGCUUCUC-CcGcCGGCCuCUCCGc -3' miRNA: 3'- cUGCGCGAGGAGcGaC-GUCGG-GAGGU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 29256 | 0.68 | 0.502297 |
Target: 5'- cGACGgGCcgCCgccgcuggagggccCGCUGCugacGCCCUCCGg -3' miRNA: 3'- -CUGCgCGa-GGa-------------GCGACGu---CGGGAGGU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 30259 | 0.67 | 0.507989 |
Target: 5'- cGACGCGCgg--CGCgGCGGCCCgcgcgCCc -3' miRNA: 3'- -CUGCGCGaggaGCGaCGUCGGGa----GGu -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 31836 | 0.66 | 0.616005 |
Target: 5'- uGGCGCGCgccgugcuggCCUCGCgGCgcgucuucgGGCCCggcgCCu -3' miRNA: 3'- -CUGCGCGa---------GGAGCGaCG---------UCGGGa---GGu -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 32561 | 0.68 | 0.470602 |
Target: 5'- cGGCGCGCguggaagugcucUCCUCGUccGC-GUCCUCCGc -3' miRNA: 3'- -CUGCGCG------------AGGAGCGa-CGuCGGGAGGU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 34045 | 0.66 | 0.586046 |
Target: 5'- cGCGCGCUgCCcUGcCUGCAcGCCUUCUg -3' miRNA: 3'- cUGCGCGA-GGaGC-GACGU-CGGGAGGu -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 39606 | 0.67 | 0.546575 |
Target: 5'- cGCGCGCcCCcgccgcccccgUCGC-GCAGaCCCUCCc -3' miRNA: 3'- cUGCGCGaGG-----------AGCGaCGUC-GGGAGGu -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 43659 | 0.71 | 0.322578 |
Target: 5'- uGACGUGCUCUUCGagucgcccaUGCAGCggCUCCAc -3' miRNA: 3'- -CUGCGCGAGGAGCg--------ACGUCGg-GAGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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