miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23810 5' -61.9 NC_005261.1 + 44720 0.66 0.596009
Target:  5'- uGACGCGCgCagggCGCUGCAGCugggCC-CCGa -3'
miRNA:   3'- -CUGCGCGaGga--GCGACGUCG----GGaGGU- -5'
23810 5' -61.9 NC_005261.1 + 47212 0.69 0.432035
Target:  5'- -uCGCGCUCCUCGCcGCcggggcucagcuggGGCCCcagaaagCCGa -3'
miRNA:   3'- cuGCGCGAGGAGCGaCG--------------UCGGGa------GGU- -5'
23810 5' -61.9 NC_005261.1 + 49472 0.68 0.492874
Target:  5'- gGGCGCGCaggCCgcgcggaaGCUGCAGCagaggaggccggugaCCUCCGa -3'
miRNA:   3'- -CUGCGCGa--GGag------CGACGUCG---------------GGAGGU- -5'
23810 5' -61.9 NC_005261.1 + 55417 0.69 0.434666
Target:  5'- cGCGCGCgCCggcuggCGCcaccGCgAGCCCUCCGa -3'
miRNA:   3'- cUGCGCGaGGa-----GCGa---CG-UCGGGAGGU- -5'
23810 5' -61.9 NC_005261.1 + 55604 0.69 0.408783
Target:  5'- cAUGCGCUCCUCcugguccaGCaGCGcGUCCUCCGc -3'
miRNA:   3'- cUGCGCGAGGAG--------CGaCGU-CGGGAGGU- -5'
23810 5' -61.9 NC_005261.1 + 56189 0.7 0.344682
Target:  5'- cGACGCGCgggcucccuUCCUCGaCUucgccgucGCGGCCC-CCAa -3'
miRNA:   3'- -CUGCGCG---------AGGAGC-GA--------CGUCGGGaGGU- -5'
23810 5' -61.9 NC_005261.1 + 57597 0.69 0.390425
Target:  5'- cGAUGUGCcaCCUgGCggcgcacgccgcGCAGCCCUCCGg -3'
miRNA:   3'- -CUGCGCGa-GGAgCGa-----------CGUCGGGAGGU- -5'
23810 5' -61.9 NC_005261.1 + 59147 0.66 0.566222
Target:  5'- cGGCGCGCcCCgggCGCgcgGC-GCCCgccCCAg -3'
miRNA:   3'- -CUGCGCGaGGa--GCGa--CGuCGGGa--GGU- -5'
23810 5' -61.9 NC_005261.1 + 59519 0.68 0.461474
Target:  5'- cGCGCGC-CCU-GgaGCAGCCCcgCCGc -3'
miRNA:   3'- cUGCGCGaGGAgCgaCGUCGGGa-GGU- -5'
23810 5' -61.9 NC_005261.1 + 59740 0.67 0.507989
Target:  5'- cGGCGCGCggccgcCCUCcaccagGCAGgCCUCCAu -3'
miRNA:   3'- -CUGCGCGa-----GGAGcga---CGUCgGGAGGU- -5'
23810 5' -61.9 NC_005261.1 + 60141 0.67 0.556373
Target:  5'- cACGgGCUCCcaggCGCUGCAGgCgCCgcugCCGu -3'
miRNA:   3'- cUGCgCGAGGa---GCGACGUC-G-GGa---GGU- -5'
23810 5' -61.9 NC_005261.1 + 60211 0.71 0.322578
Target:  5'- cGCGCGCUCC-CGCcGCGgggcGCCC-CCAg -3'
miRNA:   3'- cUGCGCGAGGaGCGaCGU----CGGGaGGU- -5'
23810 5' -61.9 NC_005261.1 + 60898 0.66 0.596009
Target:  5'- gGGCGagcaGUUCCU-GCUcuacCGGCCCUCCAc -3'
miRNA:   3'- -CUGCg---CGAGGAgCGAc---GUCGGGAGGU- -5'
23810 5' -61.9 NC_005261.1 + 61293 0.67 0.536832
Target:  5'- aGACGCGCUUCUaccaCUGCcGCCCaCCu -3'
miRNA:   3'- -CUGCGCGAGGAgc--GACGuCGGGaGGu -5'
23810 5' -61.9 NC_005261.1 + 62217 0.66 0.576115
Target:  5'- uGCGCGCggCCgCGuCUGC-GCCCUCgCGg -3'
miRNA:   3'- cUGCGCGa-GGaGC-GACGuCGGGAG-GU- -5'
23810 5' -61.9 NC_005261.1 + 62309 0.66 0.576115
Target:  5'- gGGCGCGCggcggCCcCGCgguccccCAGCgCCUCCAc -3'
miRNA:   3'- -CUGCGCGa----GGaGCGac-----GUCG-GGAGGU- -5'
23810 5' -61.9 NC_005261.1 + 62849 0.67 0.556373
Target:  5'- uGGCGCGCcCCgcgccaCGCgGCGGCCUUUUAu -3'
miRNA:   3'- -CUGCGCGaGGa-----GCGaCGUCGGGAGGU- -5'
23810 5' -61.9 NC_005261.1 + 64829 0.69 0.434666
Target:  5'- cGCGCGCcgggUCCgcgCGCUGCAGCgCCaugaCCGc -3'
miRNA:   3'- cUGCGCG----AGGa--GCGACGUCG-GGa---GGU- -5'
23810 5' -61.9 NC_005261.1 + 65658 0.68 0.498518
Target:  5'- uGGCGCGCgCCggCGC-GCAGCgCCgCCAg -3'
miRNA:   3'- -CUGCGCGaGGa-GCGaCGUCG-GGaGGU- -5'
23810 5' -61.9 NC_005261.1 + 66473 0.68 0.496634
Target:  5'- aGGCGCGCgUCCUCGCgguacagcgagaGCGGCaCCagCAg -3'
miRNA:   3'- -CUGCGCG-AGGAGCGa-----------CGUCG-GGagGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.