Results 21 - 40 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23810 | 5' | -61.9 | NC_005261.1 | + | 55604 | 0.69 | 0.408783 |
Target: 5'- cAUGCGCUCCUCcugguccaGCaGCGcGUCCUCCGc -3' miRNA: 3'- cUGCGCGAGGAG--------CGaCGU-CGGGAGGU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 47212 | 0.69 | 0.432035 |
Target: 5'- -uCGCGCUCCUCGCcGCcggggcucagcuggGGCCCcagaaagCCGa -3' miRNA: 3'- cuGCGCGAGGAGCGaCG--------------UCGGGa------GGU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 55417 | 0.69 | 0.434666 |
Target: 5'- cGCGCGCgCCggcuggCGCcaccGCgAGCCCUCCGa -3' miRNA: 3'- cUGCGCGaGGa-----GCGa---CG-UCGGGAGGU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 76600 | 0.69 | 0.434666 |
Target: 5'- uGGCGCGCg---CGCUGCcGCCCgCCGc -3' miRNA: 3'- -CUGCGCGaggaGCGACGuCGGGaGGU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 3581 | 0.69 | 0.434666 |
Target: 5'- cGCGCGCUCCacCGCgucGCGGgCCgcgCCAa -3' miRNA: 3'- cUGCGCGAGGa-GCGa--CGUCgGGa--GGU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 14456 | 0.69 | 0.434666 |
Target: 5'- gGGCGCGCggcggagCUCGC-GCuGGUCCUCCAa -3' miRNA: 3'- -CUGCGCGag-----GAGCGaCG-UCGGGAGGU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 64829 | 0.69 | 0.434666 |
Target: 5'- cGCGCGCcgggUCCgcgCGCUGCAGCgCCaugaCCGc -3' miRNA: 3'- cUGCGCG----AGGa--GCGACGUCG-GGa---GGU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 107877 | 0.69 | 0.434666 |
Target: 5'- cGCGCGCUCg-CGCccGCGGCCCgcuugUCCGc -3' miRNA: 3'- cUGCGCGAGgaGCGa-CGUCGGG-----AGGU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 132112 | 0.69 | 0.434666 |
Target: 5'- cGACGCGCUCgUggagcgggaCGCgcgGCugaccGCCCUCCu -3' miRNA: 3'- -CUGCGCGAGgA---------GCGa--CGu----CGGGAGGu -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 130343 | 0.68 | 0.443503 |
Target: 5'- -cCGCGCUCggggacgCGCUGCGgGUCCUCUAc -3' miRNA: 3'- cuGCGCGAGga-----GCGACGU-CGGGAGGU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 102007 | 0.68 | 0.452439 |
Target: 5'- aGugGCGCagCUCGCcGCcGCCCgaggCCGc -3' miRNA: 3'- -CugCGCGagGAGCGaCGuCGGGa---GGU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 59519 | 0.68 | 0.461474 |
Target: 5'- cGCGCGC-CCU-GgaGCAGCCCcgCCGc -3' miRNA: 3'- cUGCGCGaGGAgCgaCGUCGGGa-GGU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 95914 | 0.68 | 0.461474 |
Target: 5'- cGGCGCGCUCaCUCGCgguccGaCAGCgCCaugUCCGc -3' miRNA: 3'- -CUGCGCGAG-GAGCGa----C-GUCG-GG---AGGU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 74502 | 0.68 | 0.470602 |
Target: 5'- --gGCGCUCUUCGggGCGGCgCCggggCCAu -3' miRNA: 3'- cugCGCGAGGAGCgaCGUCG-GGa---GGU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 103439 | 0.68 | 0.470602 |
Target: 5'- cGCGCGCgcgCCUCGCggucgGCcgccgcGCCCgucgCCAg -3' miRNA: 3'- cUGCGCGa--GGAGCGa----CGu-----CGGGa---GGU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 32561 | 0.68 | 0.470602 |
Target: 5'- cGGCGCGCguggaagugcucUCCUCGUccGC-GUCCUCCGc -3' miRNA: 3'- -CUGCGCG------------AGGAGCGa-CGuCGGGAGGU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 10505 | 0.68 | 0.479821 |
Target: 5'- uGCGCGCggCCgcCGCUGCGGgCC-CCGc -3' miRNA: 3'- cUGCGCGa-GGa-GCGACGUCgGGaGGU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 132451 | 0.68 | 0.489128 |
Target: 5'- cGCGUGCcCCUCG--GCcGCCCUCCGc -3' miRNA: 3'- cUGCGCGaGGAGCgaCGuCGGGAGGU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 103722 | 0.68 | 0.489128 |
Target: 5'- cGGCGUcuaGCUCCUUcuugGCgGCGgcGCCCUCCGc -3' miRNA: 3'- -CUGCG---CGAGGAG----CGaCGU--CGGGAGGU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 49472 | 0.68 | 0.492874 |
Target: 5'- gGGCGCGCaggCCgcgcggaaGCUGCAGCagaggaggccggugaCCUCCGa -3' miRNA: 3'- -CUGCGCGa--GGag------CGACGUCG---------------GGAGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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