miRNA display CGI


Results 21 - 40 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23810 5' -61.9 NC_005261.1 + 55604 0.69 0.408783
Target:  5'- cAUGCGCUCCUCcugguccaGCaGCGcGUCCUCCGc -3'
miRNA:   3'- cUGCGCGAGGAG--------CGaCGU-CGGGAGGU- -5'
23810 5' -61.9 NC_005261.1 + 47212 0.69 0.432035
Target:  5'- -uCGCGCUCCUCGCcGCcggggcucagcuggGGCCCcagaaagCCGa -3'
miRNA:   3'- cuGCGCGAGGAGCGaCG--------------UCGGGa------GGU- -5'
23810 5' -61.9 NC_005261.1 + 55417 0.69 0.434666
Target:  5'- cGCGCGCgCCggcuggCGCcaccGCgAGCCCUCCGa -3'
miRNA:   3'- cUGCGCGaGGa-----GCGa---CG-UCGGGAGGU- -5'
23810 5' -61.9 NC_005261.1 + 76600 0.69 0.434666
Target:  5'- uGGCGCGCg---CGCUGCcGCCCgCCGc -3'
miRNA:   3'- -CUGCGCGaggaGCGACGuCGGGaGGU- -5'
23810 5' -61.9 NC_005261.1 + 3581 0.69 0.434666
Target:  5'- cGCGCGCUCCacCGCgucGCGGgCCgcgCCAa -3'
miRNA:   3'- cUGCGCGAGGa-GCGa--CGUCgGGa--GGU- -5'
23810 5' -61.9 NC_005261.1 + 14456 0.69 0.434666
Target:  5'- gGGCGCGCggcggagCUCGC-GCuGGUCCUCCAa -3'
miRNA:   3'- -CUGCGCGag-----GAGCGaCG-UCGGGAGGU- -5'
23810 5' -61.9 NC_005261.1 + 64829 0.69 0.434666
Target:  5'- cGCGCGCcgggUCCgcgCGCUGCAGCgCCaugaCCGc -3'
miRNA:   3'- cUGCGCG----AGGa--GCGACGUCG-GGa---GGU- -5'
23810 5' -61.9 NC_005261.1 + 107877 0.69 0.434666
Target:  5'- cGCGCGCUCg-CGCccGCGGCCCgcuugUCCGc -3'
miRNA:   3'- cUGCGCGAGgaGCGa-CGUCGGG-----AGGU- -5'
23810 5' -61.9 NC_005261.1 + 132112 0.69 0.434666
Target:  5'- cGACGCGCUCgUggagcgggaCGCgcgGCugaccGCCCUCCu -3'
miRNA:   3'- -CUGCGCGAGgA---------GCGa--CGu----CGGGAGGu -5'
23810 5' -61.9 NC_005261.1 + 130343 0.68 0.443503
Target:  5'- -cCGCGCUCggggacgCGCUGCGgGUCCUCUAc -3'
miRNA:   3'- cuGCGCGAGga-----GCGACGU-CGGGAGGU- -5'
23810 5' -61.9 NC_005261.1 + 102007 0.68 0.452439
Target:  5'- aGugGCGCagCUCGCcGCcGCCCgaggCCGc -3'
miRNA:   3'- -CugCGCGagGAGCGaCGuCGGGa---GGU- -5'
23810 5' -61.9 NC_005261.1 + 59519 0.68 0.461474
Target:  5'- cGCGCGC-CCU-GgaGCAGCCCcgCCGc -3'
miRNA:   3'- cUGCGCGaGGAgCgaCGUCGGGa-GGU- -5'
23810 5' -61.9 NC_005261.1 + 95914 0.68 0.461474
Target:  5'- cGGCGCGCUCaCUCGCgguccGaCAGCgCCaugUCCGc -3'
miRNA:   3'- -CUGCGCGAG-GAGCGa----C-GUCG-GG---AGGU- -5'
23810 5' -61.9 NC_005261.1 + 74502 0.68 0.470602
Target:  5'- --gGCGCUCUUCGggGCGGCgCCggggCCAu -3'
miRNA:   3'- cugCGCGAGGAGCgaCGUCG-GGa---GGU- -5'
23810 5' -61.9 NC_005261.1 + 103439 0.68 0.470602
Target:  5'- cGCGCGCgcgCCUCGCggucgGCcgccgcGCCCgucgCCAg -3'
miRNA:   3'- cUGCGCGa--GGAGCGa----CGu-----CGGGa---GGU- -5'
23810 5' -61.9 NC_005261.1 + 32561 0.68 0.470602
Target:  5'- cGGCGCGCguggaagugcucUCCUCGUccGC-GUCCUCCGc -3'
miRNA:   3'- -CUGCGCG------------AGGAGCGa-CGuCGGGAGGU- -5'
23810 5' -61.9 NC_005261.1 + 10505 0.68 0.479821
Target:  5'- uGCGCGCggCCgcCGCUGCGGgCC-CCGc -3'
miRNA:   3'- cUGCGCGa-GGa-GCGACGUCgGGaGGU- -5'
23810 5' -61.9 NC_005261.1 + 132451 0.68 0.489128
Target:  5'- cGCGUGCcCCUCG--GCcGCCCUCCGc -3'
miRNA:   3'- cUGCGCGaGGAGCgaCGuCGGGAGGU- -5'
23810 5' -61.9 NC_005261.1 + 103722 0.68 0.489128
Target:  5'- cGGCGUcuaGCUCCUUcuugGCgGCGgcGCCCUCCGc -3'
miRNA:   3'- -CUGCG---CGAGGAG----CGaCGU--CGGGAGGU- -5'
23810 5' -61.9 NC_005261.1 + 49472 0.68 0.492874
Target:  5'- gGGCGCGCaggCCgcgcggaaGCUGCAGCagaggaggccggugaCCUCCGa -3'
miRNA:   3'- -CUGCGCGa--GGag------CGACGUCG---------------GGAGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.