miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23810 5' -61.9 NC_005261.1 + 62217 0.66 0.576115
Target:  5'- uGCGCGCggCCgCGuCUGC-GCCCUCgCGg -3'
miRNA:   3'- cUGCGCGa-GGaGC-GACGuCGGGAG-GU- -5'
23810 5' -61.9 NC_005261.1 + 62309 0.66 0.576115
Target:  5'- gGGCGCGCggcggCCcCGCgguccccCAGCgCCUCCAc -3'
miRNA:   3'- -CUGCGCGa----GGaGCGac-----GUCG-GGAGGU- -5'
23810 5' -61.9 NC_005261.1 + 106478 0.66 0.572153
Target:  5'- aGCGCcggGCUCCccucgUCGCccuggacuuccgaGUAGCCCUCCAg -3'
miRNA:   3'- cUGCG---CGAGG-----AGCGa------------CGUCGGGAGGU- -5'
23810 5' -61.9 NC_005261.1 + 109221 0.66 0.566222
Target:  5'- aGGCGCgGCacgCCgcgCGCUGCAGCgCggcCCAg -3'
miRNA:   3'- -CUGCG-CGa--GGa--GCGACGUCGgGa--GGU- -5'
23810 5' -61.9 NC_005261.1 + 59147 0.66 0.566222
Target:  5'- cGGCGCGCcCCgggCGCgcgGC-GCCCgccCCAg -3'
miRNA:   3'- -CUGCGCGaGGa--GCGa--CGuCGGGa--GGU- -5'
23810 5' -61.9 NC_005261.1 + 81128 0.66 0.566222
Target:  5'- cGGCGCGauguuCUCCUUGUagaugGCGccaauGCCCUCCGu -3'
miRNA:   3'- -CUGCGC-----GAGGAGCGa----CGU-----CGGGAGGU- -5'
23810 5' -61.9 NC_005261.1 + 62849 0.67 0.556373
Target:  5'- uGGCGCGCcCCgcgccaCGCgGCGGCCUUUUAu -3'
miRNA:   3'- -CUGCGCGaGGa-----GCGaCGUCGGGAGGU- -5'
23810 5' -61.9 NC_005261.1 + 10532 0.67 0.556373
Target:  5'- cGGCGCGC---UCGCUGUcGCCC-CCGg -3'
miRNA:   3'- -CUGCGCGaggAGCGACGuCGGGaGGU- -5'
23810 5' -61.9 NC_005261.1 + 60141 0.67 0.556373
Target:  5'- cACGgGCUCCcaggCGCUGCAGgCgCCgcugCCGu -3'
miRNA:   3'- cUGCgCGAGGa---GCGACGUC-G-GGa---GGU- -5'
23810 5' -61.9 NC_005261.1 + 115842 0.67 0.546575
Target:  5'- gGGCGCGUuggCC-CGC-GCGGCCC-CCGc -3'
miRNA:   3'- -CUGCGCGa--GGaGCGaCGUCGGGaGGU- -5'
23810 5' -61.9 NC_005261.1 + 39606 0.67 0.546575
Target:  5'- cGCGCGCcCCcgccgcccccgUCGC-GCAGaCCCUCCc -3'
miRNA:   3'- cUGCGCGaGG-----------AGCGaCGUC-GGGAGGu -5'
23810 5' -61.9 NC_005261.1 + 9699 0.67 0.540722
Target:  5'- -cCGCGCUCCgcccccuccccuaGCaGCAGCgCUCCGc -3'
miRNA:   3'- cuGCGCGAGGag-----------CGaCGUCGgGAGGU- -5'
23810 5' -61.9 NC_005261.1 + 61293 0.67 0.536832
Target:  5'- aGACGCGCUUCUaccaCUGCcGCCCaCCu -3'
miRNA:   3'- -CUGCGCGAGGAgc--GACGuCGGGaGGu -5'
23810 5' -61.9 NC_005261.1 + 2266 0.67 0.536832
Target:  5'- cGGCGCuCgUCCUCGCcggGCGGCgCCgCCAg -3'
miRNA:   3'- -CUGCGcG-AGGAGCGa--CGUCG-GGaGGU- -5'
23810 5' -61.9 NC_005261.1 + 126466 0.67 0.536832
Target:  5'- aGCGCGCUcgCCUCGCgGUAGUaCCgcgCCGc -3'
miRNA:   3'- cUGCGCGA--GGAGCGaCGUCG-GGa--GGU- -5'
23810 5' -61.9 NC_005261.1 + 77891 0.67 0.53489
Target:  5'- -cCGcCGuCUCCUCGCUGCAGCaggaggugagCCAg -3'
miRNA:   3'- cuGC-GC-GAGGAGCGACGUCGgga-------GGU- -5'
23810 5' -61.9 NC_005261.1 + 83068 0.67 0.53392
Target:  5'- uGCGCGCcCC-CGCgGCGGCcggcgcuuccagcgCCUCCAg -3'
miRNA:   3'- cUGCGCGaGGaGCGaCGUCG--------------GGAGGU- -5'
23810 5' -61.9 NC_005261.1 + 79646 0.67 0.52715
Target:  5'- aGCuCGUugUCCUCGCcgaGCuGGCCCUCCAc -3'
miRNA:   3'- cUGcGCG--AGGAGCGa--CG-UCGGGAGGU- -5'
23810 5' -61.9 NC_005261.1 + 103381 0.67 0.517534
Target:  5'- cGCGCGCcgCCgCGCcGCGGCcgccugcgCCUCCAg -3'
miRNA:   3'- cUGCGCGa-GGaGCGaCGUCG--------GGAGGU- -5'
23810 5' -61.9 NC_005261.1 + 88860 0.67 0.517534
Target:  5'- gGGC-CGCgCCUCGCggGaCAGCCuCUCCGu -3'
miRNA:   3'- -CUGcGCGaGGAGCGa-C-GUCGG-GAGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.