Results 1 - 20 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23810 | 5' | -61.9 | NC_005261.1 | + | 10440 | 0.66 | 0.616005 |
Target: 5'- gGACGCGUgCUgggaggcgcUGCUGCAGCUCUCg- -3' miRNA: 3'- -CUGCGCGaGGa--------GCGACGUCGGGAGgu -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 31836 | 0.66 | 0.616005 |
Target: 5'- uGGCGCGCgccgugcuggCCUCGCgGCgcgucuucgGGCCCggcgCCu -3' miRNA: 3'- -CUGCGCGa---------GGAGCGaCG---------UCGGGa---GGu -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 4320 | 0.66 | 0.616005 |
Target: 5'- aGCGCGCggccgCCUCGCggaucucgggGCagucccagaGGCCCUCgCGa -3' miRNA: 3'- cUGCGCGa----GGAGCGa---------CG---------UCGGGAG-GU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 101728 | 0.66 | 0.614003 |
Target: 5'- aGCGCGCccgcgaucagggCCUCGCU-CGGCagCUCCAg -3' miRNA: 3'- cUGCGCGa-----------GGAGCGAcGUCGg-GAGGU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 2134 | 0.66 | 0.605998 |
Target: 5'- aGCGCGCUCa-CGUccgGCGcGCCCgUCCAg -3' miRNA: 3'- cUGCGCGAGgaGCGa--CGU-CGGG-AGGU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 122813 | 0.66 | 0.605998 |
Target: 5'- cGCGCGC-CCgccagcacccgCGCUGCGGCgcggucauaCUCCAg -3' miRNA: 3'- cUGCGCGaGGa----------GCGACGUCGg--------GAGGU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 105140 | 0.66 | 0.605998 |
Target: 5'- cGGCGCGCgcaggUCCUCGCggcucgaggGCGG-CgUCCAc -3' miRNA: 3'- -CUGCGCG-----AGGAGCGa--------CGUCgGgAGGU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 132367 | 0.66 | 0.596009 |
Target: 5'- cGGCGCGCUCgCcgCGCUcGCGGCgCUguUCCc -3' miRNA: 3'- -CUGCGCGAG-Ga-GCGA-CGUCG-GG--AGGu -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 120620 | 0.66 | 0.596009 |
Target: 5'- cGugGgGCUCCU-GCUggugGCGGCCCUgUg -3' miRNA: 3'- -CugCgCGAGGAgCGA----CGUCGGGAgGu -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 103250 | 0.66 | 0.596009 |
Target: 5'- cGCGCGC-CCgcgucCGCgcaCAGCCgCUCCAg -3' miRNA: 3'- cUGCGCGaGGa----GCGac-GUCGG-GAGGU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 60898 | 0.66 | 0.596009 |
Target: 5'- gGGCGagcaGUUCCU-GCUcuacCGGCCCUCCAc -3' miRNA: 3'- -CUGCg---CGAGGAgCGAc---GUCGGGAGGU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 44720 | 0.66 | 0.596009 |
Target: 5'- uGACGCGCgCagggCGCUGCAGCugggCC-CCGa -3' miRNA: 3'- -CUGCGCGaGga--GCGACGUCG----GGaGGU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 104213 | 0.66 | 0.586046 |
Target: 5'- --gGCGCUCgCgCGCgGCGcgcaccguGCCCUCCAg -3' miRNA: 3'- cugCGCGAG-GaGCGaCGU--------CGGGAGGU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 34045 | 0.66 | 0.586046 |
Target: 5'- cGCGCGCUgCCcUGcCUGCAcGCCUUCUg -3' miRNA: 3'- cUGCGCGA-GGaGC-GACGU-CGGGAGGu -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 119266 | 0.66 | 0.586046 |
Target: 5'- uGCGCGCUCCugcUCGCUGggcgggGGCUCgCCGa -3' miRNA: 3'- cUGCGCGAGG---AGCGACg-----UCGGGaGGU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 100879 | 0.66 | 0.586046 |
Target: 5'- aGCGCGCgcagccCCUCGUacGCGGCCUcgCCGc -3' miRNA: 3'- cUGCGCGa-----GGAGCGa-CGUCGGGa-GGU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 68303 | 0.66 | 0.586046 |
Target: 5'- gGGCGCGgaCCUC--UGCGGCCgCUUCGa -3' miRNA: 3'- -CUGCGCgaGGAGcgACGUCGG-GAGGU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 130535 | 0.66 | 0.580083 |
Target: 5'- cGCGCccGCUCgUCGCguuuuaucugcuggGCGGCCCgCCGg -3' miRNA: 3'- cUGCG--CGAGgAGCGa-------------CGUCGGGaGGU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 134318 | 0.66 | 0.576115 |
Target: 5'- -cCGCGCUggagcuggUCUCGCUGCuguaccgcaAGCCC-CCGc -3' miRNA: 3'- cuGCGCGA--------GGAGCGACG---------UCGGGaGGU- -5' |
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23810 | 5' | -61.9 | NC_005261.1 | + | 75655 | 0.66 | 0.576115 |
Target: 5'- cGGCGCGUUCCUgGCgcgcgcGCAGaaCCUCUu -3' miRNA: 3'- -CUGCGCGAGGAgCGa-----CGUCg-GGAGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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