miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23810 5' -61.9 NC_005261.1 + 135642 0.67 0.517534
Target:  5'- uGCGCuGCUaCCUgCGCgggcgcggGCGGCCCUCg- -3'
miRNA:   3'- cUGCG-CGA-GGA-GCGa-------CGUCGGGAGgu -5'
23810 5' -61.9 NC_005261.1 + 134318 0.66 0.576115
Target:  5'- -cCGCGCUggagcuggUCUCGCUGCuguaccgcaAGCCC-CCGc -3'
miRNA:   3'- cuGCGCGA--------GGAGCGACG---------UCGGGaGGU- -5'
23810 5' -61.9 NC_005261.1 + 132451 0.68 0.489128
Target:  5'- cGCGUGCcCCUCG--GCcGCCCUCCGc -3'
miRNA:   3'- cUGCGCGaGGAGCgaCGuCGGGAGGU- -5'
23810 5' -61.9 NC_005261.1 + 132367 0.66 0.596009
Target:  5'- cGGCGCGCUCgCcgCGCUcGCGGCgCUguUCCc -3'
miRNA:   3'- -CUGCGCGAG-Ga-GCGA-CGUCG-GG--AGGu -5'
23810 5' -61.9 NC_005261.1 + 132112 0.69 0.434666
Target:  5'- cGACGCGCUCgUggagcgggaCGCgcgGCugaccGCCCUCCu -3'
miRNA:   3'- -CUGCGCGAGgA---------GCGa--CGu----CGGGAGGu -5'
23810 5' -61.9 NC_005261.1 + 130535 0.66 0.580083
Target:  5'- cGCGCccGCUCgUCGCguuuuaucugcuggGCGGCCCgCCGg -3'
miRNA:   3'- cUGCG--CGAGgAGCGa-------------CGUCGGGaGGU- -5'
23810 5' -61.9 NC_005261.1 + 130343 0.68 0.443503
Target:  5'- -cCGCGCUCggggacgCGCUGCGgGUCCUCUAc -3'
miRNA:   3'- cuGCGCGAGga-----GCGACGU-CGGGAGGU- -5'
23810 5' -61.9 NC_005261.1 + 127276 0.68 0.498518
Target:  5'- gGGCcCGC-CCgcCGCggggGCAGCCCUCCc -3'
miRNA:   3'- -CUGcGCGaGGa-GCGa---CGUCGGGAGGu -5'
23810 5' -61.9 NC_005261.1 + 126466 0.67 0.536832
Target:  5'- aGCGCGCUcgCCUCGCgGUAGUaCCgcgCCGc -3'
miRNA:   3'- cUGCGCGA--GGAGCGaCGUCG-GGa--GGU- -5'
23810 5' -61.9 NC_005261.1 + 122813 0.66 0.605998
Target:  5'- cGCGCGC-CCgccagcacccgCGCUGCGGCgcggucauaCUCCAg -3'
miRNA:   3'- cUGCGCGaGGa----------GCGACGUCGg--------GAGGU- -5'
23810 5' -61.9 NC_005261.1 + 120620 0.66 0.596009
Target:  5'- cGugGgGCUCCU-GCUggugGCGGCCCUgUg -3'
miRNA:   3'- -CugCgCGAGGAgCGA----CGUCGGGAgGu -5'
23810 5' -61.9 NC_005261.1 + 119266 0.66 0.586046
Target:  5'- uGCGCGCUCCugcUCGCUGggcgggGGCUCgCCGa -3'
miRNA:   3'- cUGCGCGAGG---AGCGACg-----UCGGGaGGU- -5'
23810 5' -61.9 NC_005261.1 + 118084 0.71 0.30155
Target:  5'- -cCGCGCUCgUCuGCUgGCGGCCCgCCGc -3'
miRNA:   3'- cuGCGCGAGgAG-CGA-CGUCGGGaGGU- -5'
23810 5' -61.9 NC_005261.1 + 115842 0.67 0.546575
Target:  5'- gGGCGCGUuggCC-CGC-GCGGCCC-CCGc -3'
miRNA:   3'- -CUGCGCGa--GGaGCGaCGUCGGGaGGU- -5'
23810 5' -61.9 NC_005261.1 + 109221 0.66 0.566222
Target:  5'- aGGCGCgGCacgCCgcgCGCUGCAGCgCggcCCAg -3'
miRNA:   3'- -CUGCG-CGa--GGa--GCGACGUCGgGa--GGU- -5'
23810 5' -61.9 NC_005261.1 + 107877 0.69 0.434666
Target:  5'- cGCGCGCUCg-CGCccGCGGCCCgcuugUCCGc -3'
miRNA:   3'- cUGCGCGAGgaGCGa-CGUCGGG-----AGGU- -5'
23810 5' -61.9 NC_005261.1 + 106478 0.66 0.572153
Target:  5'- aGCGCcggGCUCCccucgUCGCccuggacuuccgaGUAGCCCUCCAg -3'
miRNA:   3'- cUGCG---CGAGG-----AGCGa------------CGUCGGGAGGU- -5'
23810 5' -61.9 NC_005261.1 + 105924 0.7 0.383884
Target:  5'- cGCGCGC-CCaCGCcGC-GCCCUCCGc -3'
miRNA:   3'- cUGCGCGaGGaGCGaCGuCGGGAGGU- -5'
23810 5' -61.9 NC_005261.1 + 105140 0.66 0.605998
Target:  5'- cGGCGCGCgcaggUCCUCGCggcucgaggGCGG-CgUCCAc -3'
miRNA:   3'- -CUGCGCG-----AGGAGCGa--------CGUCgGgAGGU- -5'
23810 5' -61.9 NC_005261.1 + 104213 0.66 0.586046
Target:  5'- --gGCGCUCgCgCGCgGCGcgcaccguGCCCUCCAg -3'
miRNA:   3'- cugCGCGAG-GaGCGaCGU--------CGGGAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.