miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23811 5' -52.7 NC_005261.1 + 129612 0.66 0.982955
Target:  5'- -aUUUCGCgGCGGGG---UCGGGCGCCu -3'
miRNA:   3'- gcAAGGUG-UGCUCCaguAGCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 105258 0.66 0.982955
Target:  5'- --aUCCGCGCGAcaGGcUCggCGGGCGgCa -3'
miRNA:   3'- gcaAGGUGUGCU--CC-AGuaGCUCGUgG- -5'
23811 5' -52.7 NC_005261.1 + 67063 0.66 0.982955
Target:  5'- gCGggCgCGCGCGGGGgcUCGcUCGGGCGguCCa -3'
miRNA:   3'- -GCaaG-GUGUGCUCC--AGU-AGCUCGU--GG- -5'
23811 5' -52.7 NC_005261.1 + 80485 0.66 0.982955
Target:  5'- uCGcgCCACuu--GGUCAgCGAGCACa -3'
miRNA:   3'- -GCaaGGUGugcuCCAGUaGCUCGUGg -5'
23811 5' -52.7 NC_005261.1 + 59236 0.66 0.982955
Target:  5'- cCGggCCACgaGCGAGag---CGGGCGCCg -3'
miRNA:   3'- -GCaaGGUG--UGCUCcaguaGCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 33760 0.66 0.982955
Target:  5'- cCGggCCcgcuCGCGGGGcccgCggCGAGCGCUg -3'
miRNA:   3'- -GCaaGGu---GUGCUCCa---GuaGCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 32141 0.66 0.980907
Target:  5'- ---aCCGCugGGGG-C-UCGGcGCGCCg -3'
miRNA:   3'- gcaaGGUGugCUCCaGuAGCU-CGUGG- -5'
23811 5' -52.7 NC_005261.1 + 135297 0.66 0.980693
Target:  5'- gGUUCCGCGCGAccGG-CGUgucgcccUGGGCgGCCg -3'
miRNA:   3'- gCAAGGUGUGCU--CCaGUA-------GCUCG-UGG- -5'
23811 5' -52.7 NC_005261.1 + 56722 0.66 0.97868
Target:  5'- gGgaCCACGcCGAGcG-CAUCG-GCGCCu -3'
miRNA:   3'- gCaaGGUGU-GCUC-CaGUAGCuCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 99962 0.66 0.976267
Target:  5'- uCGUgcuUCUGCACGAGGUCca--GGCGCg -3'
miRNA:   3'- -GCA---AGGUGUGCUCCAGuagcUCGUGg -5'
23811 5' -52.7 NC_005261.1 + 105302 0.66 0.976267
Target:  5'- gCGcgCgaGCGCGGGGUCcUCGcacuccgccccGGCGCCg -3'
miRNA:   3'- -GCaaGg-UGUGCUCCAGuAGC-----------UCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 93918 0.66 0.976267
Target:  5'- gCGgcgCC-CGCGGGcuugcgccGUCcgCGGGCGCCg -3'
miRNA:   3'- -GCaa-GGuGUGCUC--------CAGuaGCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 92729 0.66 0.97366
Target:  5'- gCGggagCgGgGCGGGGaCAgCGAGCGCCg -3'
miRNA:   3'- -GCaa--GgUgUGCUCCaGUaGCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 83871 0.66 0.97366
Target:  5'- cCGggCCGgACGccGGGUCAgcucUGAGCGCg -3'
miRNA:   3'- -GCaaGGUgUGC--UCCAGUa---GCUCGUGg -5'
23811 5' -52.7 NC_005261.1 + 106993 0.66 0.97366
Target:  5'- ---aCCGCGuCGgccAGGUCcgcCGAGCGCCa -3'
miRNA:   3'- gcaaGGUGU-GC---UCCAGua-GCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 53762 0.66 0.97366
Target:  5'- aCGUacgCCGCGCGgcaaacgaccGGGUCGUCGccguCGCCu -3'
miRNA:   3'- -GCAa--GGUGUGC----------UCCAGUAGCuc--GUGG- -5'
23811 5' -52.7 NC_005261.1 + 101283 0.66 0.97366
Target:  5'- --cUCCAUgggccCGcGGUCGUCGAugcGCGCCg -3'
miRNA:   3'- gcaAGGUGu----GCuCCAGUAGCU---CGUGG- -5'
23811 5' -52.7 NC_005261.1 + 5217 0.66 0.973388
Target:  5'- --gUCCGCggacucgAUGAGGUCGuacaggUCGAGCgugGCCg -3'
miRNA:   3'- gcaAGGUG-------UGCUCCAGU------AGCUCG---UGG- -5'
23811 5' -52.7 NC_005261.1 + 79052 0.66 0.97085
Target:  5'- gCGUcgUCCuugagcgcGCGCGuGGUgAUCGGGUACa -3'
miRNA:   3'- -GCA--AGG--------UGUGCuCCAgUAGCUCGUGg -5'
23811 5' -52.7 NC_005261.1 + 83622 0.66 0.97085
Target:  5'- gCGUggUCCAgCGCGAGGUCcagCGcGUACg -3'
miRNA:   3'- -GCA--AGGU-GUGCUCCAGua-GCuCGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.