miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23811 5' -52.7 NC_005261.1 + 116236 0.7 0.865095
Target:  5'- aCGUUCCACAggucgacggcgauUGGGGUCAUCacGC-CCg -3'
miRNA:   3'- -GCAAGGUGU-------------GCUCCAGUAGcuCGuGG- -5'
23811 5' -52.7 NC_005261.1 + 25035 0.7 0.865858
Target:  5'- gCGUUCU-CACGuGGUCG-CGGGCcCCa -3'
miRNA:   3'- -GCAAGGuGUGCuCCAGUaGCUCGuGG- -5'
23811 5' -52.7 NC_005261.1 + 129363 0.7 0.872623
Target:  5'- -cUUCCGCGCGcGGGUCGcgcggcuUCGGGUccACCg -3'
miRNA:   3'- gcAAGGUGUGC-UCCAGU-------AGCUCG--UGG- -5'
23811 5' -52.7 NC_005261.1 + 2449 0.7 0.873364
Target:  5'- aGcgCCu--CGGGGUCGaaggCGAGCGCCg -3'
miRNA:   3'- gCaaGGuguGCUCCAGUa---GCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 44336 0.7 0.873364
Target:  5'- gGggCUgggGCACGAGGUCAUCGA-CAUa -3'
miRNA:   3'- gCaaGG---UGUGCUCCAGUAGCUcGUGg -5'
23811 5' -52.7 NC_005261.1 + 97006 0.7 0.873364
Target:  5'- gCGcgCCAUugGgcGGGcCGUCGGGCGCg -3'
miRNA:   3'- -GCaaGGUGugC--UCCaGUAGCUCGUGg -5'
23811 5' -52.7 NC_005261.1 + 65575 0.7 0.880647
Target:  5'- aGUgCCGCACcuGGUCcgCGAGCuCCu -3'
miRNA:   3'- gCAaGGUGUGcuCCAGuaGCUCGuGG- -5'
23811 5' -52.7 NC_005261.1 + 73189 0.7 0.887702
Target:  5'- gGUgcaCACgACGAGGUUGgcccCGGGCGCCu -3'
miRNA:   3'- gCAag-GUG-UGCUCCAGUa---GCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 99881 0.7 0.894525
Target:  5'- cCGcUCgGCGCGAGGgCGUUGAcCGCCa -3'
miRNA:   3'- -GCaAGgUGUGCUCCaGUAGCUcGUGG- -5'
23811 5' -52.7 NC_005261.1 + 128108 0.69 0.901111
Target:  5'- gCGgcgCgGCGCGGGGUCGggcCGAGUGCg -3'
miRNA:   3'- -GCaa-GgUGUGCUCCAGUa--GCUCGUGg -5'
23811 5' -52.7 NC_005261.1 + 57713 0.69 0.907457
Target:  5'- uCGUccaUCUGCACGAGGUa---GAgGCGCCg -3'
miRNA:   3'- -GCA---AGGUGUGCUCCAguagCU-CGUGG- -5'
23811 5' -52.7 NC_005261.1 + 11854 0.69 0.907457
Target:  5'- gCGUUCgcgaGCGCGAGcGUCAgcugcggggCGAGC-CCg -3'
miRNA:   3'- -GCAAGg---UGUGCUC-CAGUa--------GCUCGuGG- -5'
23811 5' -52.7 NC_005261.1 + 55947 0.69 0.91356
Target:  5'- cCGUuuggcUCCccgGCGCcGGGUCucccgCGAGCGCCg -3'
miRNA:   3'- -GCA-----AGG---UGUGcUCCAGua---GCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 22696 0.69 0.91356
Target:  5'- aCGggCCcgGCgACGAGGcCGUCGAGgaGCCg -3'
miRNA:   3'- -GCaaGG--UG-UGCUCCaGUAGCUCg-UGG- -5'
23811 5' -52.7 NC_005261.1 + 83302 0.69 0.919419
Target:  5'- ---gCUGCGCGGGGUCGugcagcUCGGGCggcGCCa -3'
miRNA:   3'- gcaaGGUGUGCUCCAGU------AGCUCG---UGG- -5'
23811 5' -52.7 NC_005261.1 + 111700 0.68 0.935015
Target:  5'- uCGUggaCCGCAUGAaggcgcagucgcgGGUCGaCGAGCGCg -3'
miRNA:   3'- -GCAa--GGUGUGCU-------------CCAGUaGCUCGUGg -5'
23811 5' -52.7 NC_005261.1 + 71725 0.68 0.935516
Target:  5'- --gUCC-CGCGAcGUCGUCGAGaCGCUc -3'
miRNA:   3'- gcaAGGuGUGCUcCAGUAGCUC-GUGG- -5'
23811 5' -52.7 NC_005261.1 + 3455 0.68 0.940389
Target:  5'- gCGggCCGcCGCGccGcgCGUCGAGUACCg -3'
miRNA:   3'- -GCaaGGU-GUGCucCa-GUAGCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 113037 0.68 0.949405
Target:  5'- gCGggCCGCGCGcGG-CGUgGcGCGCCa -3'
miRNA:   3'- -GCaaGGUGUGCuCCaGUAgCuCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 99159 0.68 0.949405
Target:  5'- gCGUUCUcgAUGAuGuucUCGUCGAGCGCCa -3'
miRNA:   3'- -GCAAGGugUGCUcC---AGUAGCUCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.