miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23811 5' -52.7 NC_005261.1 + 1499 0.67 0.961145
Target:  5'- ---aCCGcCGCGGccGGcagcUCGUCGGGCGCCa -3'
miRNA:   3'- gcaaGGU-GUGCU--CC----AGUAGCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 2285 0.67 0.960065
Target:  5'- gCGgcgCCGCcaGCGccuccccgggcagcGGGUCGUaGAGCACCa -3'
miRNA:   3'- -GCaa-GGUG--UGC--------------UCCAGUAgCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 2449 0.7 0.873364
Target:  5'- aGcgCCu--CGGGGUCGaaggCGAGCGCCg -3'
miRNA:   3'- gCaaGGuguGCUCCAGUa---GCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 3455 0.68 0.940389
Target:  5'- gCGggCCGcCGCGccGcgCGUCGAGUACCg -3'
miRNA:   3'- -GCaaGGU-GUGCucCa-GUAGCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 5217 0.66 0.973388
Target:  5'- --gUCCGCggacucgAUGAGGUCGuacaggUCGAGCgugGCCg -3'
miRNA:   3'- gcaAGGUG-------UGCUCCAGU------AGCUCG---UGG- -5'
23811 5' -52.7 NC_005261.1 + 11854 0.69 0.907457
Target:  5'- gCGUUCgcgaGCGCGAGcGUCAgcugcggggCGAGC-CCg -3'
miRNA:   3'- -GCAAGg---UGUGCUC-CAGUa--------GCUCGuGG- -5'
23811 5' -52.7 NC_005261.1 + 22696 0.69 0.91356
Target:  5'- aCGggCCcgGCgACGAGGcCGUCGAGgaGCCg -3'
miRNA:   3'- -GCaaGG--UG-UGCUCCaGUAGCUCg-UGG- -5'
23811 5' -52.7 NC_005261.1 + 25035 0.7 0.865858
Target:  5'- gCGUUCU-CACGuGGUCG-CGGGCcCCa -3'
miRNA:   3'- -GCAAGGuGUGCuCCAGUaGCUCGuGG- -5'
23811 5' -52.7 NC_005261.1 + 28565 0.67 0.964599
Target:  5'- gCGgcCCGCcgggcCGAGG-CGcgCGAGCGCCg -3'
miRNA:   3'- -GCaaGGUGu----GCUCCaGUa-GCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 31303 0.74 0.711333
Target:  5'- cCGccgCCGCGCGGGGcCcgCGGGCGCg -3'
miRNA:   3'- -GCaa-GGUGUGCUCCaGuaGCUCGUGg -5'
23811 5' -52.7 NC_005261.1 + 31442 0.68 0.949405
Target:  5'- gCGgcgCCGCccgGCGAGGa---CGAGCGCCg -3'
miRNA:   3'- -GCaa-GGUG---UGCUCCaguaGCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 32141 0.66 0.980907
Target:  5'- ---aCCGCugGGGG-C-UCGGcGCGCCg -3'
miRNA:   3'- gcaaGGUGugCUCCaGuAGCU-CGUGG- -5'
23811 5' -52.7 NC_005261.1 + 33482 0.76 0.577031
Target:  5'- cCGggCCcgcuCGCGGGGcCcgCGAGCACCa -3'
miRNA:   3'- -GCaaGGu---GUGCUCCaGuaGCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 33760 0.66 0.982955
Target:  5'- cCGggCCcgcuCGCGGGGcccgCggCGAGCGCUg -3'
miRNA:   3'- -GCaaGGu---GUGCUCCa---GuaGCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 35772 0.71 0.8502
Target:  5'- uCGggCCgagACAgGAGGcCcgCGGGCGCCa -3'
miRNA:   3'- -GCaaGG---UGUgCUCCaGuaGCUCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 37526 0.74 0.670333
Target:  5'- uCGgccugCCGCACGAGGUC--CGcGCGCCg -3'
miRNA:   3'- -GCaa---GGUGUGCUCCAGuaGCuCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 41016 0.77 0.496583
Target:  5'- aGggCCGCgaagACGAGGUCGUCGucguuguccccGGCGCCg -3'
miRNA:   3'- gCaaGGUG----UGCUCCAGUAGC-----------UCGUGG- -5'
23811 5' -52.7 NC_005261.1 + 41259 0.73 0.731454
Target:  5'- gCGUacUCCAC-CGAGGUC-UCGcucuGCGCCc -3'
miRNA:   3'- -GCA--AGGUGuGCUCCAGuAGCu---CGUGG- -5'
23811 5' -52.7 NC_005261.1 + 42318 0.67 0.964599
Target:  5'- aGUagUACACGAGGUCG-CGGaacuGCACg -3'
miRNA:   3'- gCAagGUGUGCUCCAGUaGCU----CGUGg -5'
23811 5' -52.7 NC_005261.1 + 44336 0.7 0.873364
Target:  5'- gGggCUgggGCACGAGGUCAUCGA-CAUa -3'
miRNA:   3'- gCaaGG---UGUGCUCCAGUAGCUcGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.