Results 1 - 20 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23811 | 5' | -52.7 | NC_005261.1 | + | 129612 | 0.66 | 0.982955 |
Target: 5'- -aUUUCGCgGCGGGG---UCGGGCGCCu -3' miRNA: 3'- gcAAGGUG-UGCUCCaguAGCUCGUGG- -5' |
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23811 | 5' | -52.7 | NC_005261.1 | + | 100403 | 0.72 | 0.798576 |
Target: 5'- cCGUugUCCA-GCGGGGggcgCAUCGAGgCGCCc -3' miRNA: 3'- -GCA--AGGUgUGCUCCa---GUAGCUC-GUGG- -5' |
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23811 | 5' | -52.7 | NC_005261.1 | + | 63398 | 0.72 | 0.807619 |
Target: 5'- cCGUggUCgaACAUGAGGUCGUCG-GCGuCCg -3' miRNA: 3'- -GCA--AGg-UGUGCUCCAGUAGCuCGU-GG- -5' |
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23811 | 5' | -52.7 | NC_005261.1 | + | 64823 | 0.71 | 0.816497 |
Target: 5'- gCGcgCCGCGCGccGGGUCcgCGcgcugcAGCGCCa -3' miRNA: 3'- -GCaaGGUGUGC--UCCAGuaGC------UCGUGG- -5' |
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23811 | 5' | -52.7 | NC_005261.1 | + | 110922 | 0.71 | 0.842062 |
Target: 5'- uGUUCCugcCGCGcuGGG-CAcCGAGCGCCg -3' miRNA: 3'- gCAAGGu--GUGC--UCCaGUaGCUCGUGG- -5' |
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23811 | 5' | -52.7 | NC_005261.1 | + | 68640 | 0.71 | 0.842062 |
Target: 5'- ---cCCGCGacCGAGGUCAUCGu-CACCg -3' miRNA: 3'- gcaaGGUGU--GCUCCAGUAGCucGUGG- -5' |
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23811 | 5' | -52.7 | NC_005261.1 | + | 35772 | 0.71 | 0.8502 |
Target: 5'- uCGggCCgagACAgGAGGcCcgCGGGCGCCa -3' miRNA: 3'- -GCaaGG---UGUgCUCCaGuaGCUCGUGG- -5' |
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23811 | 5' | -52.7 | NC_005261.1 | + | 72971 | 0.71 | 0.8502 |
Target: 5'- cCGccgCCGCG-GGGGUCcgCGAGCGCg -3' miRNA: 3'- -GCaa-GGUGUgCUCCAGuaGCUCGUGg -5' |
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23811 | 5' | -52.7 | NC_005261.1 | + | 85273 | 0.7 | 0.858134 |
Target: 5'- ---aCCACugGGGGUuaggCGUCGGGCucCCg -3' miRNA: 3'- gcaaGGUGugCUCCA----GUAGCUCGu-GG- -5' |
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23811 | 5' | -52.7 | NC_005261.1 | + | 92431 | 0.72 | 0.789379 |
Target: 5'- cCG-UCCGCGaGAGGUCGaacggGAGCACCa -3' miRNA: 3'- -GCaAGGUGUgCUCCAGUag---CUCGUGG- -5' |
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23811 | 5' | -52.7 | NC_005261.1 | + | 85994 | 0.73 | 0.760947 |
Target: 5'- uGcgCCGCcgACGGGG-CGUCGuGCGCCa -3' miRNA: 3'- gCaaGGUG--UGCUCCaGUAGCuCGUGG- -5' |
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23811 | 5' | -52.7 | NC_005261.1 | + | 99602 | 0.73 | 0.741387 |
Target: 5'- --gUCCAcCGCGAGcGUCGUCcacAGCGCCg -3' miRNA: 3'- gcaAGGU-GUGCUC-CAGUAGc--UCGUGG- -5' |
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23811 | 5' | -52.7 | NC_005261.1 | + | 106457 | 0.77 | 0.526245 |
Target: 5'- aCG-UCCGCGCGGGcGUCcaaGAGCGCCg -3' miRNA: 3'- -GCaAGGUGUGCUC-CAGuagCUCGUGG- -5' |
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23811 | 5' | -52.7 | NC_005261.1 | + | 104176 | 0.77 | 0.546386 |
Target: 5'- gGcgCCGCGCGcGGGUCGUCGGGCGg- -3' miRNA: 3'- gCaaGGUGUGC-UCCAGUAGCUCGUgg -5' |
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23811 | 5' | -52.7 | NC_005261.1 | + | 33482 | 0.76 | 0.577031 |
Target: 5'- cCGggCCcgcuCGCGGGGcCcgCGAGCACCa -3' miRNA: 3'- -GCaaGGu---GUGCUCCaGuaGCUCGUGG- -5' |
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23811 | 5' | -52.7 | NC_005261.1 | + | 125278 | 0.74 | 0.659979 |
Target: 5'- gGggCCGCugGAaGUCAggccgCGGGCGCCg -3' miRNA: 3'- gCaaGGUGugCUcCAGUa----GCUCGUGG- -5' |
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23811 | 5' | -52.7 | NC_005261.1 | + | 37526 | 0.74 | 0.670333 |
Target: 5'- uCGgccugCCGCACGAGGUC--CGcGCGCCg -3' miRNA: 3'- -GCaa---GGUGUGCUCCAGuaGCuCGUGG- -5' |
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23811 | 5' | -52.7 | NC_005261.1 | + | 31303 | 0.74 | 0.711333 |
Target: 5'- cCGccgCCGCGCGGGGcCcgCGGGCGCg -3' miRNA: 3'- -GCaa-GGUGUGCUCCaGuaGCUCGUGg -5' |
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23811 | 5' | -52.7 | NC_005261.1 | + | 41259 | 0.73 | 0.731454 |
Target: 5'- gCGUacUCCAC-CGAGGUC-UCGcucuGCGCCc -3' miRNA: 3'- -GCA--AGGUGuGCUCCAGuAGCu---CGUGG- -5' |
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23811 | 5' | -52.7 | NC_005261.1 | + | 84954 | 0.73 | 0.731454 |
Target: 5'- uCGgcggCCGC-CGAGG-CGUCGGGCGCg -3' miRNA: 3'- -GCaa--GGUGuGCUCCaGUAGCUCGUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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