miRNA display CGI


Results 61 - 80 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23812 5' -55.6 NC_005261.1 + 65580 0.67 0.798841
Target:  5'- ----cGCACCuGgUCCGC-GAGCUCCUg -3'
miRNA:   3'- aaauuUGUGG-CgGGGCGuCUCGAGGA- -5'
23812 5' -55.6 NC_005261.1 + 35817 0.68 0.789534
Target:  5'- -cUGGACcCCgGCCCCG-AGAGCUCg- -3'
miRNA:   3'- aaAUUUGuGG-CGGGGCgUCUCGAGga -5'
23812 5' -55.6 NC_005261.1 + 21649 0.68 0.789534
Target:  5'- --cGGACGCCGCUgCCGCAccgccgguacGuGCUCCg -3'
miRNA:   3'- aaaUUUGUGGCGG-GGCGU----------CuCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 81477 0.68 0.789534
Target:  5'- ----cACGCCGCCCagaGCAGGGC-Cg- -3'
miRNA:   3'- aaauuUGUGGCGGGg--CGUCUCGaGga -5'
23812 5' -55.6 NC_005261.1 + 105403 0.68 0.789534
Target:  5'- ----cGCGCCGCUCgaCGUAGGGCUCg- -3'
miRNA:   3'- aaauuUGUGGCGGG--GCGUCUCGAGga -5'
23812 5' -55.6 NC_005261.1 + 32131 0.68 0.780077
Target:  5'- ----cGCGCCGCCaaCCGCugGGGGCUCg- -3'
miRNA:   3'- aaauuUGUGGCGG--GGCG--UCUCGAGga -5'
23812 5' -55.6 NC_005261.1 + 665 0.68 0.770479
Target:  5'- ---cGGCGCCGaguccuggccCUCCGCGGAcGCUCCg -3'
miRNA:   3'- aaauUUGUGGC----------GGGGCGUCU-CGAGGa -5'
23812 5' -55.6 NC_005261.1 + 44870 0.68 0.769512
Target:  5'- --aGAGCGCCGCCgcgagcgCCGCGGGGauggCCg -3'
miRNA:   3'- aaaUUUGUGGCGG-------GGCGUCUCga--GGa -5'
23812 5' -55.6 NC_005261.1 + 95744 0.68 0.760751
Target:  5'- ---cGGCGCCGCCgCCGCcgccgGGGGCgCCg -3'
miRNA:   3'- aaauUUGUGGCGG-GGCG-----UCUCGaGGa -5'
23812 5' -55.6 NC_005261.1 + 31443 0.68 0.760751
Target:  5'- ---cGGCGCCGCCCgGCGaggacGAGCgCCg -3'
miRNA:   3'- aaauUUGUGGCGGGgCGU-----CUCGaGGa -5'
23812 5' -55.6 NC_005261.1 + 105185 0.68 0.760751
Target:  5'- -----cCGCCGCCgCCGCGGcaGGCUCg- -3'
miRNA:   3'- aaauuuGUGGCGG-GGCGUC--UCGAGga -5'
23812 5' -55.6 NC_005261.1 + 68750 0.68 0.750902
Target:  5'- --gAAGCGcCCGCCggggcgCCGCGGAGCcgCCg -3'
miRNA:   3'- aaaUUUGU-GGCGG------GGCGUCUCGa-GGa -5'
23812 5' -55.6 NC_005261.1 + 132311 0.69 0.740943
Target:  5'- cUUAGGCGCCccaucCCCCGCGGGGa-CCUg -3'
miRNA:   3'- aAAUUUGUGGc----GGGGCGUCUCgaGGA- -5'
23812 5' -55.6 NC_005261.1 + 2939 0.69 0.740943
Target:  5'- -----cCACCGCCgCgGCcGGGCUCCg -3'
miRNA:   3'- aaauuuGUGGCGG-GgCGuCUCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 100828 0.69 0.740943
Target:  5'- ----uGCGCCGCCCagGCcgGGAGCUCg- -3'
miRNA:   3'- aaauuUGUGGCGGGg-CG--UCUCGAGga -5'
23812 5' -55.6 NC_005261.1 + 11641 0.69 0.739942
Target:  5'- ---cGGCGCCcccucgaGCCCCGcCGGAGCcCCUg -3'
miRNA:   3'- aaauUUGUGG-------CGGGGC-GUCUCGaGGA- -5'
23812 5' -55.6 NC_005261.1 + 82386 0.69 0.730884
Target:  5'- ---cAGCGCCGCccagCCCGCGGGGCcgucgUCCc -3'
miRNA:   3'- aaauUUGUGGCG----GGGCGUCUCG-----AGGa -5'
23812 5' -55.6 NC_005261.1 + 40785 0.69 0.730884
Target:  5'- ---cAGC-CCGCCgCGCAG-GCUCCc -3'
miRNA:   3'- aaauUUGuGGCGGgGCGUCuCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 130580 0.69 0.730884
Target:  5'- --gAAGCGCCGCCgCGCGGccccGCgCCUg -3'
miRNA:   3'- aaaUUUGUGGCGGgGCGUCu---CGaGGA- -5'
23812 5' -55.6 NC_005261.1 + 51320 0.69 0.730884
Target:  5'- ---cGGCGCCGCCgCCGCcuucgucGGGCUCUUc -3'
miRNA:   3'- aaauUUGUGGCGG-GGCGu------CUCGAGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.