miRNA display CGI


Results 21 - 40 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23812 5' -55.6 NC_005261.1 + 118320 0.66 0.879559
Target:  5'- ----cGCACCGCgcugcuggccaugaCCUGCGGGcuGCUCCUc -3'
miRNA:   3'- aaauuUGUGGCG--------------GGGCGUCU--CGAGGA- -5'
23812 5' -55.6 NC_005261.1 + 116731 0.72 0.523212
Target:  5'- -----uCGCCGCCCUGCuGAGCcCCUu -3'
miRNA:   3'- aaauuuGUGGCGGGGCGuCUCGaGGA- -5'
23812 5' -55.6 NC_005261.1 + 116509 0.66 0.863737
Target:  5'- --aGAGCGCCGCCgCgGCGGcgcgaggcccgccGCUCCg -3'
miRNA:   3'- aaaUUUGUGGCGG-GgCGUCu------------CGAGGa -5'
23812 5' -55.6 NC_005261.1 + 116186 0.71 0.605912
Target:  5'- ---cGACGCCGCUgggcgcgucgCCGCAGAagcGCUCCa -3'
miRNA:   3'- aaauUUGUGGCGG----------GGCGUCU---CGAGGa -5'
23812 5' -55.6 NC_005261.1 + 115006 0.66 0.888841
Target:  5'- ---cGGCcCCgGCCCCGCGGAGg-CCUc -3'
miRNA:   3'- aaauUUGuGG-CGGGGCGUCUCgaGGA- -5'
23812 5' -55.6 NC_005261.1 + 113579 0.66 0.874397
Target:  5'- --cGGugGCCGCCgCGCuGGGCgaCCUc -3'
miRNA:   3'- aaaUUugUGGCGGgGCGuCUCGa-GGA- -5'
23812 5' -55.6 NC_005261.1 + 110943 0.71 0.574543
Target:  5'- --cGAGCGCCGCCCgGCggcccacccgggAGAGCUgCa -3'
miRNA:   3'- aaaUUUGUGGCGGGgCG------------UCUCGAgGa -5'
23812 5' -55.6 NC_005261.1 + 107669 0.66 0.881736
Target:  5'- -----cCGCgGCCCCGCcGGGCguugCCg -3'
miRNA:   3'- aaauuuGUGgCGGGGCGuCUCGa---GGa -5'
23812 5' -55.6 NC_005261.1 + 107013 0.67 0.807989
Target:  5'- --cGAGCGCCacguGCCCaaggaGCAGGGCgcgCCa -3'
miRNA:   3'- aaaUUUGUGG----CGGGg----CGUCUCGa--GGa -5'
23812 5' -55.6 NC_005261.1 + 106582 0.71 0.584966
Target:  5'- ---cGGgGCCGCCgCGCGGcGCUCCUc -3'
miRNA:   3'- aaauUUgUGGCGGgGCGUCuCGAGGA- -5'
23812 5' -55.6 NC_005261.1 + 105403 0.68 0.789534
Target:  5'- ----cGCGCCGCUCgaCGUAGGGCUCg- -3'
miRNA:   3'- aaauuUGUGGCGGG--GCGUCUCGAGga -5'
23812 5' -55.6 NC_005261.1 + 105185 0.68 0.760751
Target:  5'- -----cCGCCGCCgCCGCGGcaGGCUCg- -3'
miRNA:   3'- aaauuuGUGGCGG-GGCGUC--UCGAGga -5'
23812 5' -55.6 NC_005261.1 + 104691 0.7 0.67943
Target:  5'- -cUGGGcCACCGCCCCGaAGAGCggCUg -3'
miRNA:   3'- aaAUUU-GUGGCGGGGCgUCUCGagGA- -5'
23812 5' -55.6 NC_005261.1 + 103383 0.69 0.727848
Target:  5'- ----cGCGCCGCCgcgCCGCGGccgccugcgccuccAGCUCCg -3'
miRNA:   3'- aaauuUGUGGCGG---GGCGUC--------------UCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 101790 0.71 0.605912
Target:  5'- ------uGCCGCCCgGCGGGGCUgCg -3'
miRNA:   3'- aaauuugUGGCGGGgCGUCUCGAgGa -5'
23812 5' -55.6 NC_005261.1 + 101256 0.67 0.841974
Target:  5'- ---cAGCGCgucgaugCGCUCCGCaaAGGGCUCCa -3'
miRNA:   3'- aaauUUGUG-------GCGGGGCG--UCUCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 101194 0.67 0.825771
Target:  5'- ----cACGCCGCCgCCGCcGA-CUCCa -3'
miRNA:   3'- aaauuUGUGGCGG-GGCGuCUcGAGGa -5'
23812 5' -55.6 NC_005261.1 + 101161 0.73 0.503162
Target:  5'- ----cGCGCCGCCgCGaAGAGCUCCc -3'
miRNA:   3'- aaauuUGUGGCGGgGCgUCUCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 100828 0.69 0.740943
Target:  5'- ----uGCGCCGCCCagGCcgGGAGCUCg- -3'
miRNA:   3'- aaauuUGUGGCGGGg-CG--UCUCGAGga -5'
23812 5' -55.6 NC_005261.1 + 100060 0.69 0.700203
Target:  5'- ----cGCGCCGCCgCCGCccgGGGGCgcgCCg -3'
miRNA:   3'- aaauuUGUGGCGG-GGCG---UCUCGa--GGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.