miRNA display CGI


Results 21 - 40 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23812 5' -55.6 NC_005261.1 + 83248 0.71 0.583922
Target:  5'- --cGGAC-UCGCCCugguucgcggugaCGCAGAGCUCCUc -3'
miRNA:   3'- aaaUUUGuGGCGGG-------------GCGUCUCGAGGA- -5'
23812 5' -55.6 NC_005261.1 + 106582 0.71 0.584966
Target:  5'- ---cGGgGCCGCCgCGCGGcGCUCCUc -3'
miRNA:   3'- aaauUUgUGGCGGgGCGUCuCGAGGA- -5'
23812 5' -55.6 NC_005261.1 + 101790 0.71 0.605912
Target:  5'- ------uGCCGCCCgGCGGGGCUgCg -3'
miRNA:   3'- aaauuugUGGCGGGgCGUCUCGAgGa -5'
23812 5' -55.6 NC_005261.1 + 20122 0.71 0.605912
Target:  5'- ----cGCGCgGgCCCGCAGcGGCUCCg -3'
miRNA:   3'- aaauuUGUGgCgGGGCGUC-UCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 72966 0.71 0.605912
Target:  5'- ----cGCGcCCGCCgCCGCGGGGgUCCg -3'
miRNA:   3'- aaauuUGU-GGCGG-GGCGUCUCgAGGa -5'
23812 5' -55.6 NC_005261.1 + 81454 0.71 0.605912
Target:  5'- --cGGGCGCCGCCagcaGCAGGGC-CCa -3'
miRNA:   3'- aaaUUUGUGGCGGgg--CGUCUCGaGGa -5'
23812 5' -55.6 NC_005261.1 + 87635 0.71 0.605912
Target:  5'- --cGAACGCCGCCUccaCGguGAGC-CCg -3'
miRNA:   3'- aaaUUUGUGGCGGG---GCguCUCGaGGa -5'
23812 5' -55.6 NC_005261.1 + 40868 0.71 0.605912
Target:  5'- --cGAAgGCCGCCCCGaaCAGGGUUCg- -3'
miRNA:   3'- aaaUUUgUGGCGGGGC--GUCUCGAGga -5'
23812 5' -55.6 NC_005261.1 + 116186 0.71 0.605912
Target:  5'- ---cGACGCCGCUgggcgcgucgCCGCAGAagcGCUCCa -3'
miRNA:   3'- aaauUUGUGGCGG----------GGCGUCU---CGAGGa -5'
23812 5' -55.6 NC_005261.1 + 31303 0.71 0.61642
Target:  5'- -----cCGCCGCCgCGCGGGGC-CCg -3'
miRNA:   3'- aaauuuGUGGCGGgGCGUCUCGaGGa -5'
23812 5' -55.6 NC_005261.1 + 72876 0.71 0.61642
Target:  5'- --cGGGCAgguCCGCCCCGCcgccgggguAGAGCUCg- -3'
miRNA:   3'- aaaUUUGU---GGCGGGGCG---------UCUCGAGga -5'
23812 5' -55.6 NC_005261.1 + 54628 0.71 0.61642
Target:  5'- --cGAGCACCGCCCgCGUgauGAGCgcgCCc -3'
miRNA:   3'- aaaUUUGUGGCGGG-GCGu--CUCGa--GGa -5'
23812 5' -55.6 NC_005261.1 + 52039 0.71 0.62694
Target:  5'- ---cAACGcCCGCCCCGCccgccGCUCCUa -3'
miRNA:   3'- aaauUUGU-GGCGGGGCGucu--CGAGGA- -5'
23812 5' -55.6 NC_005261.1 + 58729 0.71 0.62694
Target:  5'- -----cCGCCGCCgCGCAGAGCgcgCUg -3'
miRNA:   3'- aaauuuGUGGCGGgGCGUCUCGa--GGa -5'
23812 5' -55.6 NC_005261.1 + 15641 0.7 0.637465
Target:  5'- gUUGuAGCGCCGCCCgGCcgggagcuGGuGCUCCa -3'
miRNA:   3'- aAAU-UUGUGGCGGGgCG--------UCuCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 74462 0.7 0.647985
Target:  5'- --gGGGCGCCGCCCCcgGCGcGGCgugCCUg -3'
miRNA:   3'- aaaUUUGUGGCGGGG--CGUcUCGa--GGA- -5'
23812 5' -55.6 NC_005261.1 + 62113 0.7 0.647985
Target:  5'- gUUGGccACGCCGUCCUGCAG-GC-CCUg -3'
miRNA:   3'- aAAUU--UGUGGCGGGGCGUCuCGaGGA- -5'
23812 5' -55.6 NC_005261.1 + 14775 0.7 0.658492
Target:  5'- --gGGGgGCCGCCCCGCgcAGGugccGCUCCc -3'
miRNA:   3'- aaaUUUgUGGCGGGGCG--UCU----CGAGGa -5'
23812 5' -55.6 NC_005261.1 + 104691 0.7 0.67943
Target:  5'- -cUGGGcCACCGCCCCGaAGAGCggCUg -3'
miRNA:   3'- aaAUUU-GUGGCGGGGCgUCUCGagGA- -5'
23812 5' -55.6 NC_005261.1 + 86366 0.7 0.67943
Target:  5'- --aAGGCGcCCGCgUCGCAGcGCUCCa -3'
miRNA:   3'- aaaUUUGU-GGCGgGGCGUCuCGAGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.