Results 1 - 20 of 134 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23812 | 5' | -55.6 | NC_005261.1 | + | 58333 | 0.83 | 0.124607 |
Target: 5'- --cGAGCACCGCCUCGCGGAGCcgcgCCg -3' miRNA: 3'- aaaUUUGUGGCGGGGCGUCUCGa---GGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 118590 | 0.81 | 0.166653 |
Target: 5'- ----cGCGCCGCCgCCGCGGAGCUCg- -3' miRNA: 3'- aaauuUGUGGCGG-GGCGUCUCGAGga -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 71148 | 0.8 | 0.204824 |
Target: 5'- --cAAGCGCCGCCCCgGCAG-GCUCUg -3' miRNA: 3'- aaaUUUGUGGCGGGG-CGUCuCGAGGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 133353 | 0.76 | 0.326125 |
Target: 5'- ---cGGCGCUGCCgCGCAGGGCUUCg -3' miRNA: 3'- aaauUUGUGGCGGgGCGUCUCGAGGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 50915 | 0.76 | 0.348746 |
Target: 5'- ---cGGCGCCGCCUCGCcgggcgcGGGGCUCCc -3' miRNA: 3'- aaauUUGUGGCGGGGCG-------UCUCGAGGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 33986 | 0.75 | 0.365813 |
Target: 5'- -----cCGCCGCCCCGgAGcugGGCUCCUg -3' miRNA: 3'- aaauuuGUGGCGGGGCgUC---UCGAGGA- -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 125300 | 0.75 | 0.37414 |
Target: 5'- --cGGGCGCCGgaCCCGCGGGcGCUCCg -3' miRNA: 3'- aaaUUUGUGGCg-GGGCGUCU-CGAGGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 18748 | 0.75 | 0.382595 |
Target: 5'- --aAAACAgCgGCCCCGCAGAGCagggCCa -3' miRNA: 3'- aaaUUUGU-GgCGGGGCGUCUCGa---GGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 70909 | 0.75 | 0.40871 |
Target: 5'- cUUGcGCGCCacGUCCCGCGcGAGCUCCa -3' miRNA: 3'- aAAUuUGUGG--CGGGGCGU-CUCGAGGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 6255 | 0.74 | 0.417659 |
Target: 5'- ----uGC-CCGCCCCGCGGGGCggcCCg -3' miRNA: 3'- aaauuUGuGGCGGGGCGUCUCGa--GGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 27461 | 0.74 | 0.445205 |
Target: 5'- ------gGCCGCCCCGCGGGGCgggcaggCCc -3' miRNA: 3'- aaauuugUGGCGGGGCGUCUCGa------GGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 101161 | 0.73 | 0.503162 |
Target: 5'- ----cGCGCCGCCgCGaAGAGCUCCc -3' miRNA: 3'- aaauuUGUGGCGGgGCgUCUCGAGGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 135151 | 0.73 | 0.513147 |
Target: 5'- ---cGACGCCGCCuCCGCccgcucgaucgGGAGCUCgCUg -3' miRNA: 3'- aaauUUGUGGCGG-GGCG-----------UCUCGAG-GA- -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 116731 | 0.72 | 0.523212 |
Target: 5'- -----uCGCCGCCCUGCuGAGCcCCUu -3' miRNA: 3'- aaauuuGUGGCGGGGCGuCUCGaGGA- -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 125534 | 0.72 | 0.533352 |
Target: 5'- ----cGCGCCG-CCCGCAGGGCggcgCCa -3' miRNA: 3'- aaauuUGUGGCgGGGCGUCUCGa---GGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 42213 | 0.72 | 0.533352 |
Target: 5'- ----cGCGCgggCGCCCCGCcgcGAGCUCCg -3' miRNA: 3'- aaauuUGUG---GCGGGGCGu--CUCGAGGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 15790 | 0.72 | 0.533352 |
Target: 5'- --cGGGCGCCGCCCgCGCGGccAGCgCCg -3' miRNA: 3'- aaaUUUGUGGCGGG-GCGUC--UCGaGGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 4588 | 0.71 | 0.574543 |
Target: 5'- --gGGGCGCC-CCCCGgcgcCAGGGCUCCc -3' miRNA: 3'- aaaUUUGUGGcGGGGC----GUCUCGAGGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 110943 | 0.71 | 0.574543 |
Target: 5'- --cGAGCGCCGCCCgGCggcccacccgggAGAGCUgCa -3' miRNA: 3'- aaaUUUGUGGCGGGgCG------------UCUCGAgGa -5' |
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23812 | 5' | -55.6 | NC_005261.1 | + | 120956 | 0.71 | 0.574543 |
Target: 5'- --gAGGCuCgCGCCCCGCGGGGCgcgugCCg -3' miRNA: 3'- aaaUUUGuG-GCGGGGCGUCUCGa----GGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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