miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23812 5' -55.6 NC_005261.1 + 95206 0.66 0.888841
Target:  5'- ----cGCGCCGCCCgcccgCGCGGugcguGUUCCa -3'
miRNA:   3'- aaauuUGUGGCGGG-----GCGUCu----CGAGGa -5'
23812 5' -55.6 NC_005261.1 + 135151 0.73 0.513147
Target:  5'- ---cGACGCCGCCuCCGCccgcucgaucgGGAGCUCgCUg -3'
miRNA:   3'- aaauUUGUGGCGG-GGCG-----------UCUCGAG-GA- -5'
23812 5' -55.6 NC_005261.1 + 116731 0.72 0.523212
Target:  5'- -----uCGCCGCCCUGCuGAGCcCCUu -3'
miRNA:   3'- aaauuuGUGGCGGGGCGuCUCGaGGA- -5'
23812 5' -55.6 NC_005261.1 + 15790 0.72 0.533352
Target:  5'- --cGGGCGCCGCCCgCGCGGccAGCgCCg -3'
miRNA:   3'- aaaUUUGUGGCGGG-GCGUC--UCGaGGa -5'
23812 5' -55.6 NC_005261.1 + 42213 0.72 0.533352
Target:  5'- ----cGCGCgggCGCCCCGCcgcGAGCUCCg -3'
miRNA:   3'- aaauuUGUG---GCGGGGCGu--CUCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 125534 0.72 0.533352
Target:  5'- ----cGCGCCG-CCCGCAGGGCggcgCCa -3'
miRNA:   3'- aaauuUGUGGCgGGGCGUCUCGa---GGa -5'
23812 5' -55.6 NC_005261.1 + 4588 0.71 0.574543
Target:  5'- --gGGGCGCC-CCCCGgcgcCAGGGCUCCc -3'
miRNA:   3'- aaaUUUGUGGcGGGGC----GUCUCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 110943 0.71 0.574543
Target:  5'- --cGAGCGCCGCCCgGCggcccacccgggAGAGCUgCa -3'
miRNA:   3'- aaaUUUGUGGCGGGgCG------------UCUCGAgGa -5'
23812 5' -55.6 NC_005261.1 + 120956 0.71 0.574543
Target:  5'- --gAGGCuCgCGCCCCGCGGGGCgcgugCCg -3'
miRNA:   3'- aaaUUUGuG-GCGGGGCGUCUCGa----GGa -5'
23812 5' -55.6 NC_005261.1 + 101161 0.73 0.503162
Target:  5'- ----cGCGCCGCCgCGaAGAGCUCCc -3'
miRNA:   3'- aaauuUGUGGCGGgGCgUCUCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 27461 0.74 0.445205
Target:  5'- ------gGCCGCCCCGCGGGGCgggcaggCCc -3'
miRNA:   3'- aaauuugUGGCGGGGCGUCUCGa------GGa -5'
23812 5' -55.6 NC_005261.1 + 6255 0.74 0.417659
Target:  5'- ----uGC-CCGCCCCGCGGGGCggcCCg -3'
miRNA:   3'- aaauuUGuGGCGGGGCGUCUCGa--GGa -5'
23812 5' -55.6 NC_005261.1 + 118590 0.81 0.166653
Target:  5'- ----cGCGCCGCCgCCGCGGAGCUCg- -3'
miRNA:   3'- aaauuUGUGGCGG-GGCGUCUCGAGga -5'
23812 5' -55.6 NC_005261.1 + 71148 0.8 0.204824
Target:  5'- --cAAGCGCCGCCCCgGCAG-GCUCUg -3'
miRNA:   3'- aaaUUUGUGGCGGGG-CGUCuCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 133353 0.76 0.326125
Target:  5'- ---cGGCGCUGCCgCGCAGGGCUUCg -3'
miRNA:   3'- aaauUUGUGGCGGgGCGUCUCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 50915 0.76 0.348746
Target:  5'- ---cGGCGCCGCCUCGCcgggcgcGGGGCUCCc -3'
miRNA:   3'- aaauUUGUGGCGGGGCG-------UCUCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 33986 0.75 0.365813
Target:  5'- -----cCGCCGCCCCGgAGcugGGCUCCUg -3'
miRNA:   3'- aaauuuGUGGCGGGGCgUC---UCGAGGA- -5'
23812 5' -55.6 NC_005261.1 + 125300 0.75 0.37414
Target:  5'- --cGGGCGCCGgaCCCGCGGGcGCUCCg -3'
miRNA:   3'- aaaUUUGUGGCg-GGGCGUCU-CGAGGa -5'
23812 5' -55.6 NC_005261.1 + 18748 0.75 0.382595
Target:  5'- --aAAACAgCgGCCCCGCAGAGCagggCCa -3'
miRNA:   3'- aaaUUUGU-GgCGGGGCGUCUCGa---GGa -5'
23812 5' -55.6 NC_005261.1 + 70909 0.75 0.40871
Target:  5'- cUUGcGCGCCacGUCCCGCGcGAGCUCCa -3'
miRNA:   3'- aAAUuUGUGG--CGGGGCGU-CUCGAGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.