miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23812 5' -55.6 NC_005261.1 + 87672 0.66 0.851026
Target:  5'- ---cAGCACCGCCa-GCGGugagucgcAGCUCCg -3'
miRNA:   3'- aaauUUGUGGCGGggCGUC--------UCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 97911 0.66 0.851026
Target:  5'- -cUGGGCGCCGggcguCCCCGCuGuacuggccgccAGCUCCg -3'
miRNA:   3'- aaAUUUGUGGC-----GGGGCGuC-----------UCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 9322 0.66 0.874397
Target:  5'- ---cAGgACCGCCCCGCcgccgacGAGC-CCa -3'
miRNA:   3'- aaauUUgUGGCGGGGCGu------CUCGaGGa -5'
23812 5' -55.6 NC_005261.1 + 96039 0.66 0.859035
Target:  5'- ---cAACGCCGCguCCCGCcc-GCUCCa -3'
miRNA:   3'- aaauUUGUGGCG--GGGCGucuCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 83850 0.66 0.866827
Target:  5'- -----cCGCgGCCCCGCuGGGCUgggCCg -3'
miRNA:   3'- aaauuuGUGgCGGGGCGuCUCGA---GGa -5'
23812 5' -55.6 NC_005261.1 + 79158 0.66 0.851026
Target:  5'- --cGAGCACCagcaGCCCCGUGGccAGCgcgCCg -3'
miRNA:   3'- aaaUUUGUGG----CGGGGCGUC--UCGa--GGa -5'
23812 5' -55.6 NC_005261.1 + 45022 0.66 0.859035
Target:  5'- --gGAACGCgGUCCCGCGcuuccucugcGAGgUCCg -3'
miRNA:   3'- aaaUUUGUGgCGGGGCGU----------CUCgAGGa -5'
23812 5' -55.6 NC_005261.1 + 50101 0.66 0.851026
Target:  5'- ----cACGCUGCCCgcgccgCGCAGGGCcgCCa -3'
miRNA:   3'- aaauuUGUGGCGGG------GCGUCUCGa-GGa -5'
23812 5' -55.6 NC_005261.1 + 29827 0.66 0.851026
Target:  5'- ----cGCGCCGCgCUCGCcGAGCUgCg -3'
miRNA:   3'- aaauuUGUGGCG-GGGCGuCUCGAgGa -5'
23812 5' -55.6 NC_005261.1 + 134569 0.66 0.851026
Target:  5'- ---cGGCGCCGCggcUgCGCAGGGCgggCCUg -3'
miRNA:   3'- aaauUUGUGGCG---GgGCGUCUCGa--GGA- -5'
23812 5' -55.6 NC_005261.1 + 1282 0.66 0.851026
Target:  5'- ---cGGCGCCcaGgCCgGCGGGGCUCCc -3'
miRNA:   3'- aaauUUGUGG--CgGGgCGUCUCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 47263 0.66 0.874397
Target:  5'- ----uGCGCCGgCCCGCcggcgaAGAGCgCCg -3'
miRNA:   3'- aaauuUGUGGCgGGGCG------UCUCGaGGa -5'
23812 5' -55.6 NC_005261.1 + 82992 0.66 0.874397
Target:  5'- --gAGGCgGCCGCCUCGCGcaccGAGCcgCCg -3'
miRNA:   3'- aaaUUUG-UGGCGGGGCGU----CUCGa-GGa -5'
23812 5' -55.6 NC_005261.1 + 120239 0.66 0.866827
Target:  5'- --gGAGCGCCGCUUCGCcGcGGCUgCCa -3'
miRNA:   3'- aaaUUUGUGGCGGGGCGuC-UCGA-GGa -5'
23812 5' -55.6 NC_005261.1 + 131108 0.66 0.859035
Target:  5'- ----cGCGCCGCCCaaccccuCAGGGCUCg- -3'
miRNA:   3'- aaauuUGUGGCGGGgc-----GUCUCGAGga -5'
23812 5' -55.6 NC_005261.1 + 46491 0.66 0.859035
Target:  5'- ---cGGCGCC-CUCCGCGGGGCgcagCCc -3'
miRNA:   3'- aaauUUGUGGcGGGGCGUCUCGa---GGa -5'
23812 5' -55.6 NC_005261.1 + 36957 0.66 0.874397
Target:  5'- --aAGGC-CCGCCgcgcggCGCAGAGCUCg- -3'
miRNA:   3'- aaaUUUGuGGCGGg-----GCGUCUCGAGga -5'
23812 5' -55.6 NC_005261.1 + 77337 0.66 0.859035
Target:  5'- ---cGGCGCCGCCCCccgccaugagcGCAGuGCaCCa -3'
miRNA:   3'- aaauUUGUGGCGGGG-----------CGUCuCGaGGa -5'
23812 5' -55.6 NC_005261.1 + 95206 0.66 0.888841
Target:  5'- ----cGCGCCGCCCgcccgCGCGGugcguGUUCCa -3'
miRNA:   3'- aaauuUGUGGCGGG-----GCGUCu----CGAGGa -5'
23812 5' -55.6 NC_005261.1 + 122261 0.66 0.866827
Target:  5'- ---cAGCGCCGCCgCCGuCAGGGC-Cg- -3'
miRNA:   3'- aaauUUGUGGCGG-GGC-GUCUCGaGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.