miRNA display CGI


Results 1 - 20 of 134 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23812 5' -55.6 NC_005261.1 + 125 0.69 0.710504
Target:  5'- ---cGGCGCCGCCCCuggugcucGCGGGGCUg-- -3'
miRNA:   3'- aaauUUGUGGCGGGG--------CGUCUCGAgga -5'
23812 5' -55.6 NC_005261.1 + 665 0.68 0.770479
Target:  5'- ---cGGCGCCGaguccuggccCUCCGCGGAcGCUCCg -3'
miRNA:   3'- aaauUUGUGGC----------GGGGCGUCU-CGAGGa -5'
23812 5' -55.6 NC_005261.1 + 1282 0.66 0.851026
Target:  5'- ---cGGCGCCcaGgCCgGCGGGGCUCCc -3'
miRNA:   3'- aaauUUGUGG--CgGGgCGUCUCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 2939 0.69 0.740943
Target:  5'- -----cCACCGCCgCgGCcGGGCUCCg -3'
miRNA:   3'- aaauuuGUGGCGG-GgCGuCUCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 4588 0.71 0.574543
Target:  5'- --gGGGCGCC-CCCCGgcgcCAGGGCUCCc -3'
miRNA:   3'- aaaUUUGUGGcGGGGC----GUCUCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 6255 0.74 0.417659
Target:  5'- ----uGC-CCGCCCCGCGGGGCggcCCg -3'
miRNA:   3'- aaauuUGuGGCGGGGCGUCUCGa--GGa -5'
23812 5' -55.6 NC_005261.1 + 9322 0.66 0.874397
Target:  5'- ---cAGgACCGCCCCGCcgccgacGAGC-CCa -3'
miRNA:   3'- aaauUUgUGGCGGGGCGu------CUCGaGGa -5'
23812 5' -55.6 NC_005261.1 + 9353 0.67 0.837779
Target:  5'- --gGAGCACCGCCgacgauccccgggagCCGCAuugcgagguGAGCUCg- -3'
miRNA:   3'- aaaUUUGUGGCGG---------------GGCGU---------CUCGAGga -5'
23812 5' -55.6 NC_005261.1 + 9702 0.66 0.881736
Target:  5'- ----cGCuCCGCCCCcuccccuagcaGCAGcGCUCCg -3'
miRNA:   3'- aaauuUGuGGCGGGG-----------CGUCuCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 11214 0.69 0.719714
Target:  5'- -aUAAACGCCGCguggcccCCCGCGGGcgcGCUuCCUc -3'
miRNA:   3'- aaAUUUGUGGCG-------GGGCGUCU---CGA-GGA- -5'
23812 5' -55.6 NC_005261.1 + 11641 0.69 0.739942
Target:  5'- ---cGGCGCCcccucgaGCCCCGcCGGAGCcCCUg -3'
miRNA:   3'- aaauUUGUGG-------CGGGGC-GUCUCGaGGA- -5'
23812 5' -55.6 NC_005261.1 + 14775 0.7 0.658492
Target:  5'- --gGGGgGCCGCCCCGCgcAGGugccGCUCCc -3'
miRNA:   3'- aaaUUUgUGGCGGGGCG--UCU----CGAGGa -5'
23812 5' -55.6 NC_005261.1 + 15641 0.7 0.637465
Target:  5'- gUUGuAGCGCCGCCCgGCcgggagcuGGuGCUCCa -3'
miRNA:   3'- aAAU-UUGUGGCGGGgCG--------UCuCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 15790 0.72 0.533352
Target:  5'- --cGGGCGCCGCCCgCGCGGccAGCgCCg -3'
miRNA:   3'- aaaUUUGUGGCGGG-GCGUC--UCGaGGa -5'
23812 5' -55.6 NC_005261.1 + 18748 0.75 0.382595
Target:  5'- --aAAACAgCgGCCCCGCAGAGCagggCCa -3'
miRNA:   3'- aaaUUUGU-GgCGGGGCGUCUCGa---GGa -5'
23812 5' -55.6 NC_005261.1 + 20122 0.71 0.605912
Target:  5'- ----cGCGCgGgCCCGCAGcGGCUCCg -3'
miRNA:   3'- aaauuUGUGgCgGGGCGUC-UCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 21649 0.68 0.789534
Target:  5'- --cGGACGCCGCUgCCGCAccgccgguacGuGCUCCg -3'
miRNA:   3'- aaaUUUGUGGCGG-GGCGU----------CuCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 21877 0.67 0.816969
Target:  5'- --cGAACG-CGCgCCCGCGGGGCcCCc -3'
miRNA:   3'- aaaUUUGUgGCG-GGGCGUCUCGaGGa -5'
23812 5' -55.6 NC_005261.1 + 23198 0.66 0.874397
Target:  5'- ----cGCGCCGCggggCCCGCAGcGGCggCCg -3'
miRNA:   3'- aaauuUGUGGCG----GGGCGUC-UCGa-GGa -5'
23812 5' -55.6 NC_005261.1 + 27461 0.74 0.445205
Target:  5'- ------gGCCGCCCCGCGGGGCgggcaggCCc -3'
miRNA:   3'- aaauuugUGGCGGGGCGUCUCGa------GGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.