miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23815 3' -60.7 NC_005261.1 + 121194 0.66 0.715374
Target:  5'- cGGGGCCggGCCCGgggcCGcGGgccggagaCUGCa- -3'
miRNA:   3'- -CCCCGGuaCGGGCa---GCaCCa-------GACGca -5'
23815 3' -60.7 NC_005261.1 + 47099 0.66 0.715374
Target:  5'- cGGGCCAgaGCCCGUCcGUGaGgacgUGCGc -3'
miRNA:   3'- cCCCGGUa-CGGGCAG-CAC-Cag--ACGCa -5'
23815 3' -60.7 NC_005261.1 + 68288 0.66 0.686094
Target:  5'- cGGGGCCccgGCCgCGggCGcGGaccUCUGCGg -3'
miRNA:   3'- -CCCCGGua-CGG-GCa-GCaCC---AGACGCa -5'
23815 3' -60.7 NC_005261.1 + 76130 0.66 0.666349
Target:  5'- --cGCCGgcGCCCGUCGUggaGGUCgugGCGg -3'
miRNA:   3'- cccCGGUa-CGGGCAGCA---CCAGa--CGCa -5'
23815 3' -60.7 NC_005261.1 + 92775 0.67 0.656434
Target:  5'- cGGGCCGaGCCCGggcUCGgGGUCgGgGUc -3'
miRNA:   3'- cCCCGGUaCGGGC---AGCaCCAGaCgCA- -5'
23815 3' -60.7 NC_005261.1 + 105225 0.67 0.60673
Target:  5'- cGGGCCGcgGCCgCGgcCGUGaUCUGCGg -3'
miRNA:   3'- cCCCGGUa-CGG-GCa-GCACcAGACGCa -5'
23815 3' -60.7 NC_005261.1 + 109500 0.67 0.60673
Target:  5'- cGGGGCCcgcGCCCGcCGcggGGUUuauUGCGc -3'
miRNA:   3'- -CCCCGGua-CGGGCaGCa--CCAG---ACGCa -5'
23815 3' -60.7 NC_005261.1 + 45383 0.68 0.596815
Target:  5'- cGGGGCCgcccuguucGUGCagCUGUCGUGccugCUGCGg -3'
miRNA:   3'- -CCCCGG---------UACG--GGCAGCACca--GACGCa -5'
23815 3' -60.7 NC_005261.1 + 58552 0.68 0.577064
Target:  5'- cGGGCUccUGCgCCGUCGUGG-CcGCGa -3'
miRNA:   3'- cCCCGGu-ACG-GGCAGCACCaGaCGCa -5'
23815 3' -60.7 NC_005261.1 + 42030 0.68 0.577064
Target:  5'- cGGGCaugGcCCCGUCGcGGUaCUGCGc -3'
miRNA:   3'- cCCCGguaC-GGGCAGCaCCA-GACGCa -5'
23815 3' -60.7 NC_005261.1 + 113544 0.68 0.567242
Target:  5'- cGGGGCCGUGCgcgcgcuggaCCGcgagcaGUGGUCgGUGg -3'
miRNA:   3'- -CCCCGGUACG----------GGCag----CACCAGaCGCa -5'
23815 3' -60.7 NC_005261.1 + 66324 0.68 0.547732
Target:  5'- aGGcGGCCGUGCagCCcaCGaGGUCUGCGa -3'
miRNA:   3'- -CC-CCGGUACG--GGcaGCaCCAGACGCa -5'
23815 3' -60.7 NC_005261.1 + 11912 0.7 0.472242
Target:  5'- cGGGCCcgGCCCGgcCGgcGG-CUGCGg -3'
miRNA:   3'- cCCCGGuaCGGGCa-GCa-CCaGACGCa -5'
23815 3' -60.7 NC_005261.1 + 68873 0.7 0.436503
Target:  5'- -cGGCUGUGCgCCGUCGUGcG-CUGCGc -3'
miRNA:   3'- ccCCGGUACG-GGCAGCAC-CaGACGCa -5'
23815 3' -60.7 NC_005261.1 + 33755 0.71 0.419226
Target:  5'- cGGGGCCggGCCCGcUCGcggGGcCcGCGg -3'
miRNA:   3'- -CCCCGGuaCGGGC-AGCa--CCaGaCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.