miRNA display CGI


Results 41 - 50 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23815 5' -54.5 NC_005261.1 + 103418 0.66 0.961619
Target:  5'- uCCGCGCGGGCCGcggccacgcgcgcGCgcgC-CUCGcGGUCg -3'
miRNA:   3'- -GGUGCGUCUGGC-------------UGa--GaGAGC-UCAGg -5'
23815 5' -54.5 NC_005261.1 + 104844 0.7 0.822328
Target:  5'- gCCACGCGGACCG-Cg----CGGGUCa -3'
miRNA:   3'- -GGUGCGUCUGGCuGagagaGCUCAGg -5'
23815 5' -54.5 NC_005261.1 + 110036 0.68 0.904054
Target:  5'- gCCugGCGGGcagccccacauCCGGCUCUCgCGgcaGGUCa -3'
miRNA:   3'- -GGugCGUCU-----------GGCUGAGAGaGC---UCAGg -5'
23815 5' -54.5 NC_005261.1 + 116892 0.68 0.897703
Target:  5'- aCGCGCGGGCCGuCUUcCUCGccaacGUCg -3'
miRNA:   3'- gGUGCGUCUGGCuGAGaGAGCu----CAGg -5'
23815 5' -54.5 NC_005261.1 + 117113 0.73 0.639502
Target:  5'- aCGCGCGGcgcugaccuuGCCGugUCgcUCUCGAGgCCg -3'
miRNA:   3'- gGUGCGUC----------UGGCugAG--AGAGCUCaGG- -5'
23815 5' -54.5 NC_005261.1 + 118107 0.71 0.786995
Target:  5'- gCCGCGCAGacgcugcgccGCCGGCUCgcgccgCUCG-G-CCg -3'
miRNA:   3'- -GGUGCGUC----------UGGCUGAGa-----GAGCuCaGG- -5'
23815 5' -54.5 NC_005261.1 + 119959 0.67 0.93229
Target:  5'- aCCGCGCAcccGCCGuCUCcgUCGAGcCCc -3'
miRNA:   3'- -GGUGCGUc--UGGCuGAGagAGCUCaGG- -5'
23815 5' -54.5 NC_005261.1 + 121264 0.66 0.945956
Target:  5'- uCCGcCGCAGAcggggcggccgccCCGGCcucgCUCUCGuccccGUCCc -3'
miRNA:   3'- -GGU-GCGUCU-------------GGCUGa---GAGAGCu----CAGG- -5'
23815 5' -54.5 NC_005261.1 + 129368 0.67 0.927116
Target:  5'- gCGCGCGGgucGCgCGGCU---UCGGGUCCa -3'
miRNA:   3'- gGUGCGUC---UG-GCUGAgagAGCUCAGG- -5'
23815 5' -54.5 NC_005261.1 + 131232 0.69 0.838997
Target:  5'- gCCGCGCgcaucgAGGCUGAC-CUCgcCGAGgUCCg -3'
miRNA:   3'- -GGUGCG------UCUGGCUGaGAGa-GCUC-AGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.