miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23815 5' -54.5 NC_005261.1 + 51379 0.66 0.950625
Target:  5'- aCGCGCAGGCCGuGCgcgaaCUCcgCGAGcggagCCc -3'
miRNA:   3'- gGUGCGUCUGGC-UGa----GAGa-GCUCa----GG- -5'
23815 5' -54.5 NC_005261.1 + 55042 0.67 0.927116
Target:  5'- cCCGCGCAGcugcgcgggGCCGGCgagCUCGGccgCCg -3'
miRNA:   3'- -GGUGCGUC---------UGGCUGagaGAGCUca-GG- -5'
23815 5' -54.5 NC_005261.1 + 57367 0.66 0.948113
Target:  5'- cCCGCGCGGcCCGACgcccgccagcagCUCGGGgagcgcgCCc -3'
miRNA:   3'- -GGUGCGUCuGGCUGaga---------GAGCUCa------GG- -5'
23815 5' -54.5 NC_005261.1 + 64515 0.67 0.937226
Target:  5'- gCC-CGCGGG-CGGCUC-CUCGucggggggcaGGUCCg -3'
miRNA:   3'- -GGuGCGUCUgGCUGAGaGAGC----------UCAGG- -5'
23815 5' -54.5 NC_005261.1 + 66542 0.71 0.772211
Target:  5'- aCGCGCAGcagcuggucggccguGCCGcGCUCgaaCGAGUCCa -3'
miRNA:   3'- gGUGCGUC---------------UGGC-UGAGagaGCUCAGG- -5'
23815 5' -54.5 NC_005261.1 + 67069 0.67 0.921705
Target:  5'- gCGCGCGGG--GGCUCgCUCGggcGGUCCa -3'
miRNA:   3'- gGUGCGUCUggCUGAGaGAGC---UCAGG- -5'
23815 5' -54.5 NC_005261.1 + 67832 0.73 0.670032
Target:  5'- gCGCGCAGgaggGCCGcACUCUC-CGGG-CCg -3'
miRNA:   3'- gGUGCGUC----UGGC-UGAGAGaGCUCaGG- -5'
23815 5' -54.5 NC_005261.1 + 68998 0.74 0.588602
Target:  5'- gCCGCGCGGGCgccgCGGCUUcgUUggCGAGUCCg -3'
miRNA:   3'- -GGUGCGUCUG----GCUGAG--AGa-GCUCAGG- -5'
23815 5' -54.5 NC_005261.1 + 72937 0.67 0.939605
Target:  5'- gUCGCGCAGcgccggcgccggcACCGGCUCgcgcccgccgccgCggGGGUCCg -3'
miRNA:   3'- -GGUGCGUC-------------UGGCUGAGa------------GagCUCAGG- -5'
23815 5' -54.5 NC_005261.1 + 73825 0.78 0.408133
Target:  5'- cCCGCGCcuAGcCCGGCUCUUgggCGAGUCg -3'
miRNA:   3'- -GGUGCG--UCuGGCUGAGAGa--GCUCAGg -5'
23815 5' -54.5 NC_005261.1 + 74946 0.68 0.884315
Target:  5'- gCgGCGCGGGCgCG-CUCggcgcgCUCGAGgCCg -3'
miRNA:   3'- -GgUGCGUCUG-GCuGAGa-----GAGCUCaGG- -5'
23815 5' -54.5 NC_005261.1 + 75068 0.66 0.957298
Target:  5'- aCCGCGCGcGCCGGCgggggCUCggcgggcaucgucuUCGGGaCCu -3'
miRNA:   3'- -GGUGCGUcUGGCUGa----GAG--------------AGCUCaGG- -5'
23815 5' -54.5 NC_005261.1 + 80570 0.67 0.927116
Target:  5'- uCCGCG-AGACaGGCUC-CUUGAGgcgCCg -3'
miRNA:   3'- -GGUGCgUCUGgCUGAGaGAGCUCa--GG- -5'
23815 5' -54.5 NC_005261.1 + 80881 0.66 0.958408
Target:  5'- gCCGCGCGGGCuucagCGGCgcCUCccagGGGUCCu -3'
miRNA:   3'- -GGUGCGUCUG-----GCUGa-GAGag--CUCAGG- -5'
23815 5' -54.5 NC_005261.1 + 84372 0.66 0.946392
Target:  5'- gCC-CGCGGGCuCGGC-CUCggccgccgccUCGAGcUCCa -3'
miRNA:   3'- -GGuGCGUCUG-GCUGaGAG----------AGCUC-AGG- -5'
23815 5' -54.5 NC_005261.1 + 91854 0.68 0.910173
Target:  5'- cCCGCGCucaccGCCGGCaC-CUCGGcGUCCg -3'
miRNA:   3'- -GGUGCGuc---UGGCUGaGaGAGCU-CAGG- -5'
23815 5' -54.5 NC_005261.1 + 95306 0.69 0.862584
Target:  5'- -gGCGCAGACgGACUgCgaccccuacgUC-CGGGUCCa -3'
miRNA:   3'- ggUGCGUCUGgCUGA-G----------AGaGCUCAGG- -5'
23815 5' -54.5 NC_005261.1 + 95709 0.68 0.891122
Target:  5'- gCGCGCGGGCUcGCg--CUCGGGcCCg -3'
miRNA:   3'- gGUGCGUCUGGcUGagaGAGCUCaGG- -5'
23815 5' -54.5 NC_005261.1 + 95908 0.68 0.877287
Target:  5'- cCCGCGCGG-CgCG-CUCaCUCGcGGUCCg -3'
miRNA:   3'- -GGUGCGUCuG-GCuGAGaGAGC-UCAGG- -5'
23815 5' -54.5 NC_005261.1 + 100525 0.73 0.669018
Target:  5'- gCCGCGCGGcGCCaGCgcgucgaUCUC-CGAGUCCg -3'
miRNA:   3'- -GGUGCGUC-UGGcUG-------AGAGaGCUCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.