miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23815 5' -54.5 NC_005261.1 + 1484 0.71 0.772211
Target:  5'- gCCGCGCAGaaggccaccgccgcgGCCGGCagCUCgUCGGGcgCCa -3'
miRNA:   3'- -GGUGCGUC---------------UGGCUGa-GAG-AGCUCa-GG- -5'
23815 5' -54.5 NC_005261.1 + 1601 0.66 0.961965
Target:  5'- gCGCGguGGCUGGCcgcCUCgcccuccgCGaAGUCCg -3'
miRNA:   3'- gGUGCguCUGGCUGa--GAGa-------GC-UCAGG- -5'
23815 5' -54.5 NC_005261.1 + 2996 0.66 0.961965
Target:  5'- gCCugGCGGcCCGGCgccggggCUCccgCGGG-CCu -3'
miRNA:   3'- -GGugCGUCuGGCUGa------GAGa--GCUCaGG- -5'
23815 5' -54.5 NC_005261.1 + 3451 0.67 0.916057
Target:  5'- gCGCGCGGGCCGccGCgccgCgcgUCGAGUaCCg -3'
miRNA:   3'- gGUGCGUCUGGC--UGa---Gag-AGCUCA-GG- -5'
23815 5' -54.5 NC_005261.1 + 4321 0.67 0.916057
Target:  5'- gCGCGCGG-CCGcCUCgcggaUCUCGgggcAGUCCc -3'
miRNA:   3'- gGUGCGUCuGGCuGAG-----AGAGC----UCAGG- -5'
23815 5' -54.5 NC_005261.1 + 12655 0.68 0.891122
Target:  5'- gCCGCGCcGGCgCGACaucgucgucCUCgagCGGGUCCc -3'
miRNA:   3'- -GGUGCGuCUG-GCUGa--------GAGa--GCUCAGG- -5'
23815 5' -54.5 NC_005261.1 + 13449 0.68 0.897703
Target:  5'- gCAgGCAGGCCGGCgC-CUCGGGg-- -3'
miRNA:   3'- gGUgCGUCUGGCUGaGaGAGCUCagg -5'
23815 5' -54.5 NC_005261.1 + 15290 0.67 0.93229
Target:  5'- gCGCGCGGuCgCGGC-CUC-CGGGUCg -3'
miRNA:   3'- gGUGCGUCuG-GCUGaGAGaGCUCAGg -5'
23815 5' -54.5 NC_005261.1 + 15747 0.68 0.897703
Target:  5'- gCGCGCAGGCCGACcgC-CUCG---CCg -3'
miRNA:   3'- gGUGCGUCUGGCUGa-GaGAGCucaGG- -5'
23815 5' -54.5 NC_005261.1 + 16565 0.71 0.749451
Target:  5'- -gGCGCAgGACCuuGCUCUgCUCGuAGUCCu -3'
miRNA:   3'- ggUGCGU-CUGGc-UGAGA-GAGC-UCAGG- -5'
23815 5' -54.5 NC_005261.1 + 23770 0.67 0.921705
Target:  5'- cCCGgGCGGGCCGGCUagggugggCUCgcCGGGgcaggCCg -3'
miRNA:   3'- -GGUgCGUCUGGCUGA--------GAGa-GCUCa----GG- -5'
23815 5' -54.5 NC_005261.1 + 23827 0.67 0.921705
Target:  5'- cCCGgGCGGGCCGGCUagggugggCUCgcCGGGgcaggCCg -3'
miRNA:   3'- -GGUgCGUCUGGCUGA--------GAGa-GCUCa----GG- -5'
23815 5' -54.5 NC_005261.1 + 28481 0.76 0.480411
Target:  5'- gCCACGCucGACCuguacGAC-CUCaUCGAGUCCg -3'
miRNA:   3'- -GGUGCGu-CUGG-----CUGaGAG-AGCUCAGG- -5'
23815 5' -54.5 NC_005261.1 + 32065 0.69 0.847056
Target:  5'- gCCGCGCAGAgCgCGGCgcuggggCUCGGGgagCCg -3'
miRNA:   3'- -GGUGCGUCU-G-GCUGaga----GAGCUCa--GG- -5'
23815 5' -54.5 NC_005261.1 + 32550 0.72 0.706284
Target:  5'- gCgGCGCGGGCCGGCgcgcguggaagugCUCUCcucGUCCg -3'
miRNA:   3'- -GgUGCGUCUGGCUGa------------GAGAGcu-CAGG- -5'
23815 5' -54.5 NC_005261.1 + 37107 0.67 0.927116
Target:  5'- uCCGCGCGG-CUGuACUCUCUgCGcG-CCg -3'
miRNA:   3'- -GGUGCGUCuGGC-UGAGAGA-GCuCaGG- -5'
23815 5' -54.5 NC_005261.1 + 39231 0.66 0.946392
Target:  5'- cUCGCGCGcGCCGGCgaggUCUCcggCGAGgucUCCa -3'
miRNA:   3'- -GGUGCGUcUGGCUG----AGAGa--GCUC---AGG- -5'
23815 5' -54.5 NC_005261.1 + 39294 0.69 0.868567
Target:  5'- gCCACGguGGCgGACUacacgcgguucCUCGcGUCCa -3'
miRNA:   3'- -GGUGCguCUGgCUGAga---------GAGCuCAGG- -5'
23815 5' -54.5 NC_005261.1 + 50633 0.69 0.869305
Target:  5'- uCCACGCGGgcggcgggguggcGCCGGCgaaCgcgCUCGcccaAGUCCg -3'
miRNA:   3'- -GGUGCGUC-------------UGGCUGa--Ga--GAGC----UCAGG- -5'
23815 5' -54.5 NC_005261.1 + 51001 0.66 0.946392
Target:  5'- gCGCGUGGGCgCGGCgggagCUCggCGAGcgCCa -3'
miRNA:   3'- gGUGCGUCUG-GCUGa----GAGa-GCUCa-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.