miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23815 5' -54.5 NC_005261.1 + 73825 0.78 0.408133
Target:  5'- cCCGCGCcuAGcCCGGCUCUUgggCGAGUCg -3'
miRNA:   3'- -GGUGCG--UCuGGCUGAGAGa--GCUCAGg -5'
23815 5' -54.5 NC_005261.1 + 28481 0.76 0.480411
Target:  5'- gCCACGCucGACCuguacGAC-CUCaUCGAGUCCg -3'
miRNA:   3'- -GGUGCGu-CUGG-----CUGaGAG-AGCUCAGG- -5'
23815 5' -54.5 NC_005261.1 + 68998 0.74 0.588602
Target:  5'- gCCGCGCGGGCgccgCGGCUUcgUUggCGAGUCCg -3'
miRNA:   3'- -GGUGCGUCUG----GCUGAG--AGa-GCUCAGG- -5'
23815 5' -54.5 NC_005261.1 + 117113 0.73 0.639502
Target:  5'- aCGCGCGGcgcugaccuuGCCGugUCgcUCUCGAGgCCg -3'
miRNA:   3'- gGUGCGUC----------UGGCugAG--AGAGCUCaGG- -5'
23815 5' -54.5 NC_005261.1 + 100525 0.73 0.669018
Target:  5'- gCCGCGCGGcGCCaGCgcgucgaUCUC-CGAGUCCg -3'
miRNA:   3'- -GGUGCGUC-UGGcUG-------AGAGaGCUCAGG- -5'
23815 5' -54.5 NC_005261.1 + 67832 0.73 0.670032
Target:  5'- gCGCGCAGgaggGCCGcACUCUC-CGGG-CCg -3'
miRNA:   3'- gGUGCGUC----UGGC-UGAGAGaGCUCaGG- -5'
23815 5' -54.5 NC_005261.1 + 32550 0.72 0.706284
Target:  5'- gCgGCGCGGGCCGGCgcgcguggaagugCUCUCcucGUCCg -3'
miRNA:   3'- -GgUGCGUCUGGCUGa------------GAGAGcu-CAGG- -5'
23815 5' -54.5 NC_005261.1 + 16565 0.71 0.749451
Target:  5'- -gGCGCAgGACCuuGCUCUgCUCGuAGUCCu -3'
miRNA:   3'- ggUGCGU-CUGGc-UGAGA-GAGC-UCAGG- -5'
23815 5' -54.5 NC_005261.1 + 1484 0.71 0.772211
Target:  5'- gCCGCGCAGaaggccaccgccgcgGCCGGCagCUCgUCGGGcgCCa -3'
miRNA:   3'- -GGUGCGUC---------------UGGCUGa-GAG-AGCUCa-GG- -5'
23815 5' -54.5 NC_005261.1 + 66542 0.71 0.772211
Target:  5'- aCGCGCAGcagcuggucggccguGCCGcGCUCgaaCGAGUCCa -3'
miRNA:   3'- gGUGCGUC---------------UGGC-UGAGagaGCUCAGG- -5'
23815 5' -54.5 NC_005261.1 + 118107 0.71 0.786995
Target:  5'- gCCGCGCAGacgcugcgccGCCGGCUCgcgccgCUCG-G-CCg -3'
miRNA:   3'- -GGUGCGUC----------UGGCUGAGa-----GAGCuCaGG- -5'
23815 5' -54.5 NC_005261.1 + 104844 0.7 0.822328
Target:  5'- gCCACGCGGACCG-Cg----CGGGUCa -3'
miRNA:   3'- -GGUGCGUCUGGCuGagagaGCUCAGg -5'
23815 5' -54.5 NC_005261.1 + 131232 0.69 0.838997
Target:  5'- gCCGCGCgcaucgAGGCUGAC-CUCgcCGAGgUCCg -3'
miRNA:   3'- -GGUGCG------UCUGGCUGaGAGa-GCUC-AGG- -5'
23815 5' -54.5 NC_005261.1 + 32065 0.69 0.847056
Target:  5'- gCCGCGCAGAgCgCGGCgcuggggCUCGGGgagCCg -3'
miRNA:   3'- -GGUGCGUCU-G-GCUGaga----GAGCUCa--GG- -5'
23815 5' -54.5 NC_005261.1 + 95306 0.69 0.862584
Target:  5'- -gGCGCAGACgGACUgCgaccccuacgUC-CGGGUCCa -3'
miRNA:   3'- ggUGCGUCUGgCUGA-G----------AGaGCUCAGG- -5'
23815 5' -54.5 NC_005261.1 + 39294 0.69 0.868567
Target:  5'- gCCACGguGGCgGACUacacgcgguucCUCGcGUCCa -3'
miRNA:   3'- -GGUGCguCUGgCUGAga---------GAGCuCAGG- -5'
23815 5' -54.5 NC_005261.1 + 50633 0.69 0.869305
Target:  5'- uCCACGCGGgcggcgggguggcGCCGGCgaaCgcgCUCGcccaAGUCCg -3'
miRNA:   3'- -GGUGCGUC-------------UGGCUGa--Ga--GAGC----UCAGG- -5'
23815 5' -54.5 NC_005261.1 + 95908 0.68 0.877287
Target:  5'- cCCGCGCGG-CgCG-CUCaCUCGcGGUCCg -3'
miRNA:   3'- -GGUGCGUCuG-GCuGAGaGAGC-UCAGG- -5'
23815 5' -54.5 NC_005261.1 + 74946 0.68 0.884315
Target:  5'- gCgGCGCGGGCgCG-CUCggcgcgCUCGAGgCCg -3'
miRNA:   3'- -GgUGCGUCUG-GCuGAGa-----GAGCUCaGG- -5'
23815 5' -54.5 NC_005261.1 + 95709 0.68 0.891122
Target:  5'- gCGCGCGGGCUcGCg--CUCGGGcCCg -3'
miRNA:   3'- gGUGCGUCUGGcUGagaGAGCUCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.