miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23815 5' -54.5 NC_005261.1 + 12655 0.68 0.891122
Target:  5'- gCCGCGCcGGCgCGACaucgucgucCUCgagCGGGUCCc -3'
miRNA:   3'- -GGUGCGuCUG-GCUGa--------GAGa--GCUCAGG- -5'
23815 5' -54.5 NC_005261.1 + 13449 0.68 0.897703
Target:  5'- gCAgGCAGGCCGGCgC-CUCGGGg-- -3'
miRNA:   3'- gGUgCGUCUGGCUGaGaGAGCUCagg -5'
23815 5' -54.5 NC_005261.1 + 15747 0.68 0.897703
Target:  5'- gCGCGCAGGCCGACcgC-CUCG---CCg -3'
miRNA:   3'- gGUGCGUCUGGCUGa-GaGAGCucaGG- -5'
23815 5' -54.5 NC_005261.1 + 116892 0.68 0.897703
Target:  5'- aCGCGCGGGCCGuCUUcCUCGccaacGUCg -3'
miRNA:   3'- gGUGCGUCUGGCuGAGaGAGCu----CAGg -5'
23815 5' -54.5 NC_005261.1 + 110036 0.68 0.904054
Target:  5'- gCCugGCGGGcagccccacauCCGGCUCUCgCGgcaGGUCa -3'
miRNA:   3'- -GGugCGUCU-----------GGCUGAGAGaGC---UCAGg -5'
23815 5' -54.5 NC_005261.1 + 91854 0.68 0.910173
Target:  5'- cCCGCGCucaccGCCGGCaC-CUCGGcGUCCg -3'
miRNA:   3'- -GGUGCGuc---UGGCUGaGaGAGCU-CAGG- -5'
23815 5' -54.5 NC_005261.1 + 3451 0.67 0.916057
Target:  5'- gCGCGCGGGCCGccGCgccgCgcgUCGAGUaCCg -3'
miRNA:   3'- gGUGCGUCUGGC--UGa---Gag-AGCUCA-GG- -5'
23815 5' -54.5 NC_005261.1 + 4321 0.67 0.916057
Target:  5'- gCGCGCGG-CCGcCUCgcggaUCUCGgggcAGUCCc -3'
miRNA:   3'- gGUGCGUCuGGCuGAG-----AGAGC----UCAGG- -5'
23815 5' -54.5 NC_005261.1 + 23827 0.67 0.921705
Target:  5'- cCCGgGCGGGCCGGCUagggugggCUCgcCGGGgcaggCCg -3'
miRNA:   3'- -GGUgCGUCUGGCUGA--------GAGa-GCUCa----GG- -5'
23815 5' -54.5 NC_005261.1 + 23770 0.67 0.921705
Target:  5'- cCCGgGCGGGCCGGCUagggugggCUCgcCGGGgcaggCCg -3'
miRNA:   3'- -GGUgCGUCUGGCUGA--------GAGa-GCUCa----GG- -5'
23815 5' -54.5 NC_005261.1 + 67069 0.67 0.921705
Target:  5'- gCGCGCGGG--GGCUCgCUCGggcGGUCCa -3'
miRNA:   3'- gGUGCGUCUggCUGAGaGAGC---UCAGG- -5'
23815 5' -54.5 NC_005261.1 + 80570 0.67 0.927116
Target:  5'- uCCGCG-AGACaGGCUC-CUUGAGgcgCCg -3'
miRNA:   3'- -GGUGCgUCUGgCUGAGaGAGCUCa--GG- -5'
23815 5' -54.5 NC_005261.1 + 129368 0.67 0.927116
Target:  5'- gCGCGCGGgucGCgCGGCU---UCGGGUCCa -3'
miRNA:   3'- gGUGCGUC---UG-GCUGAgagAGCUCAGG- -5'
23815 5' -54.5 NC_005261.1 + 37107 0.67 0.927116
Target:  5'- uCCGCGCGG-CUGuACUCUCUgCGcG-CCg -3'
miRNA:   3'- -GGUGCGUCuGGC-UGAGAGA-GCuCaGG- -5'
23815 5' -54.5 NC_005261.1 + 55042 0.67 0.927116
Target:  5'- cCCGCGCAGcugcgcgggGCCGGCgagCUCGGccgCCg -3'
miRNA:   3'- -GGUGCGUC---------UGGCUGagaGAGCUca-GG- -5'
23815 5' -54.5 NC_005261.1 + 119959 0.67 0.93229
Target:  5'- aCCGCGCAcccGCCGuCUCcgUCGAGcCCc -3'
miRNA:   3'- -GGUGCGUc--UGGCuGAGagAGCUCaGG- -5'
23815 5' -54.5 NC_005261.1 + 15290 0.67 0.93229
Target:  5'- gCGCGCGGuCgCGGC-CUC-CGGGUCg -3'
miRNA:   3'- gGUGCGUCuG-GCUGaGAGaGCUCAGg -5'
23815 5' -54.5 NC_005261.1 + 64515 0.67 0.937226
Target:  5'- gCC-CGCGGG-CGGCUC-CUCGucggggggcaGGUCCg -3'
miRNA:   3'- -GGuGCGUCUgGCUGAGaGAGC----------UCAGG- -5'
23815 5' -54.5 NC_005261.1 + 72937 0.67 0.939605
Target:  5'- gUCGCGCAGcgccggcgccggcACCGGCUCgcgcccgccgccgCggGGGUCCg -3'
miRNA:   3'- -GGUGCGUC-------------UGGCUGAGa------------GagCUCAGG- -5'
23815 5' -54.5 NC_005261.1 + 121264 0.66 0.945956
Target:  5'- uCCGcCGCAGAcggggcggccgccCCGGCcucgCUCUCGuccccGUCCc -3'
miRNA:   3'- -GGU-GCGUCU-------------GGCUGa---GAGAGCu----CAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.