miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23815 5' -54.5 NC_005261.1 + 23770 0.67 0.921705
Target:  5'- cCCGgGCGGGCCGGCUagggugggCUCgcCGGGgcaggCCg -3'
miRNA:   3'- -GGUgCGUCUGGCUGA--------GAGa-GCUCa----GG- -5'
23815 5' -54.5 NC_005261.1 + 67069 0.67 0.921705
Target:  5'- gCGCGCGGG--GGCUCgCUCGggcGGUCCa -3'
miRNA:   3'- gGUGCGUCUggCUGAGaGAGC---UCAGG- -5'
23815 5' -54.5 NC_005261.1 + 3451 0.67 0.916057
Target:  5'- gCGCGCGGGCCGccGCgccgCgcgUCGAGUaCCg -3'
miRNA:   3'- gGUGCGUCUGGC--UGa---Gag-AGCUCA-GG- -5'
23815 5' -54.5 NC_005261.1 + 4321 0.67 0.916057
Target:  5'- gCGCGCGG-CCGcCUCgcggaUCUCGgggcAGUCCc -3'
miRNA:   3'- gGUGCGUCuGGCuGAG-----AGAGC----UCAGG- -5'
23815 5' -54.5 NC_005261.1 + 91854 0.68 0.910173
Target:  5'- cCCGCGCucaccGCCGGCaC-CUCGGcGUCCg -3'
miRNA:   3'- -GGUGCGuc---UGGCUGaGaGAGCU-CAGG- -5'
23815 5' -54.5 NC_005261.1 + 110036 0.68 0.904054
Target:  5'- gCCugGCGGGcagccccacauCCGGCUCUCgCGgcaGGUCa -3'
miRNA:   3'- -GGugCGUCU-----------GGCUGAGAGaGC---UCAGg -5'
23815 5' -54.5 NC_005261.1 + 15747 0.68 0.897703
Target:  5'- gCGCGCAGGCCGACcgC-CUCG---CCg -3'
miRNA:   3'- gGUGCGUCUGGCUGa-GaGAGCucaGG- -5'
23815 5' -54.5 NC_005261.1 + 13449 0.68 0.897703
Target:  5'- gCAgGCAGGCCGGCgC-CUCGGGg-- -3'
miRNA:   3'- gGUgCGUCUGGCUGaGaGAGCUCagg -5'
23815 5' -54.5 NC_005261.1 + 116892 0.68 0.897703
Target:  5'- aCGCGCGGGCCGuCUUcCUCGccaacGUCg -3'
miRNA:   3'- gGUGCGUCUGGCuGAGaGAGCu----CAGg -5'
23815 5' -54.5 NC_005261.1 + 12655 0.68 0.891122
Target:  5'- gCCGCGCcGGCgCGACaucgucgucCUCgagCGGGUCCc -3'
miRNA:   3'- -GGUGCGuCUG-GCUGa--------GAGa--GCUCAGG- -5'
23815 5' -54.5 NC_005261.1 + 95709 0.68 0.891122
Target:  5'- gCGCGCGGGCUcGCg--CUCGGGcCCg -3'
miRNA:   3'- gGUGCGUCUGGcUGagaGAGCUCaGG- -5'
23815 5' -54.5 NC_005261.1 + 74946 0.68 0.884315
Target:  5'- gCgGCGCGGGCgCG-CUCggcgcgCUCGAGgCCg -3'
miRNA:   3'- -GgUGCGUCUG-GCuGAGa-----GAGCUCaGG- -5'
23815 5' -54.5 NC_005261.1 + 95908 0.68 0.877287
Target:  5'- cCCGCGCGG-CgCG-CUCaCUCGcGGUCCg -3'
miRNA:   3'- -GGUGCGUCuG-GCuGAGaGAGC-UCAGG- -5'
23815 5' -54.5 NC_005261.1 + 50633 0.69 0.869305
Target:  5'- uCCACGCGGgcggcgggguggcGCCGGCgaaCgcgCUCGcccaAGUCCg -3'
miRNA:   3'- -GGUGCGUC-------------UGGCUGa--Ga--GAGC----UCAGG- -5'
23815 5' -54.5 NC_005261.1 + 39294 0.69 0.868567
Target:  5'- gCCACGguGGCgGACUacacgcgguucCUCGcGUCCa -3'
miRNA:   3'- -GGUGCguCUGgCUGAga---------GAGCuCAGG- -5'
23815 5' -54.5 NC_005261.1 + 95306 0.69 0.862584
Target:  5'- -gGCGCAGACgGACUgCgaccccuacgUC-CGGGUCCa -3'
miRNA:   3'- ggUGCGUCUGgCUGA-G----------AGaGCUCAGG- -5'
23815 5' -54.5 NC_005261.1 + 32065 0.69 0.847056
Target:  5'- gCCGCGCAGAgCgCGGCgcuggggCUCGGGgagCCg -3'
miRNA:   3'- -GGUGCGUCU-G-GCUGaga----GAGCUCa--GG- -5'
23815 5' -54.5 NC_005261.1 + 131232 0.69 0.838997
Target:  5'- gCCGCGCgcaucgAGGCUGAC-CUCgcCGAGgUCCg -3'
miRNA:   3'- -GGUGCG------UCUGGCUGaGAGa-GCUC-AGG- -5'
23815 5' -54.5 NC_005261.1 + 104844 0.7 0.822328
Target:  5'- gCCACGCGGACCG-Cg----CGGGUCa -3'
miRNA:   3'- -GGUGCGUCUGGCuGagagaGCUCAGg -5'
23815 5' -54.5 NC_005261.1 + 118107 0.71 0.786995
Target:  5'- gCCGCGCAGacgcugcgccGCCGGCUCgcgccgCUCG-G-CCg -3'
miRNA:   3'- -GGUGCGUC----------UGGCUGAGa-----GAGCuCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.