Results 41 - 50 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23815 | 5' | -54.5 | NC_005261.1 | + | 66542 | 0.71 | 0.772211 |
Target: 5'- aCGCGCAGcagcuggucggccguGCCGcGCUCgaaCGAGUCCa -3' miRNA: 3'- gGUGCGUC---------------UGGC-UGAGagaGCUCAGG- -5' |
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23815 | 5' | -54.5 | NC_005261.1 | + | 1484 | 0.71 | 0.772211 |
Target: 5'- gCCGCGCAGaaggccaccgccgcgGCCGGCagCUCgUCGGGcgCCa -3' miRNA: 3'- -GGUGCGUC---------------UGGCUGa-GAG-AGCUCa-GG- -5' |
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23815 | 5' | -54.5 | NC_005261.1 | + | 16565 | 0.71 | 0.749451 |
Target: 5'- -gGCGCAgGACCuuGCUCUgCUCGuAGUCCu -3' miRNA: 3'- ggUGCGU-CUGGc-UGAGA-GAGC-UCAGG- -5' |
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23815 | 5' | -54.5 | NC_005261.1 | + | 32550 | 0.72 | 0.706284 |
Target: 5'- gCgGCGCGGGCCGGCgcgcguggaagugCUCUCcucGUCCg -3' miRNA: 3'- -GgUGCGUCUGGCUGa------------GAGAGcu-CAGG- -5' |
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23815 | 5' | -54.5 | NC_005261.1 | + | 67832 | 0.73 | 0.670032 |
Target: 5'- gCGCGCAGgaggGCCGcACUCUC-CGGG-CCg -3' miRNA: 3'- gGUGCGUC----UGGC-UGAGAGaGCUCaGG- -5' |
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23815 | 5' | -54.5 | NC_005261.1 | + | 100525 | 0.73 | 0.669018 |
Target: 5'- gCCGCGCGGcGCCaGCgcgucgaUCUC-CGAGUCCg -3' miRNA: 3'- -GGUGCGUC-UGGcUG-------AGAGaGCUCAGG- -5' |
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23815 | 5' | -54.5 | NC_005261.1 | + | 117113 | 0.73 | 0.639502 |
Target: 5'- aCGCGCGGcgcugaccuuGCCGugUCgcUCUCGAGgCCg -3' miRNA: 3'- gGUGCGUC----------UGGCugAG--AGAGCUCaGG- -5' |
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23815 | 5' | -54.5 | NC_005261.1 | + | 68998 | 0.74 | 0.588602 |
Target: 5'- gCCGCGCGGGCgccgCGGCUUcgUUggCGAGUCCg -3' miRNA: 3'- -GGUGCGUCUG----GCUGAG--AGa-GCUCAGG- -5' |
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23815 | 5' | -54.5 | NC_005261.1 | + | 28481 | 0.76 | 0.480411 |
Target: 5'- gCCACGCucGACCuguacGAC-CUCaUCGAGUCCg -3' miRNA: 3'- -GGUGCGu-CUGG-----CUGaGAG-AGCUCAGG- -5' |
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23815 | 5' | -54.5 | NC_005261.1 | + | 73825 | 0.78 | 0.408133 |
Target: 5'- cCCGCGCcuAGcCCGGCUCUUgggCGAGUCg -3' miRNA: 3'- -GGUGCG--UCuGGCUGAGAGa--GCUCAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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