miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23816 3' -57.1 NC_005261.1 + 85557 0.8 0.176296
Target:  5'- gUCUgcgGCGCCGCGAGGUucGGCGCCg- -3'
miRNA:   3'- -AGAag-UGUGGCGCUCCAu-CCGCGGau -5'
23816 3' -57.1 NC_005261.1 + 50832 0.79 0.205075
Target:  5'- gCUUgGCGCCGCGAGcu-GGCGCCUGu -3'
miRNA:   3'- aGAAgUGUGGCGCUCcauCCGCGGAU- -5'
23816 3' -57.1 NC_005261.1 + 88136 0.74 0.37053
Target:  5'- uUCcUCGCGCCGCGcGG-GGGCGCCc- -3'
miRNA:   3'- -AGaAGUGUGGCGCuCCaUCCGCGGau -5'
23816 3' -57.1 NC_005261.1 + 14685 0.73 0.439752
Target:  5'- uUCUUCGCugauggUgGCGAGGggGGGCGCCUu -3'
miRNA:   3'- -AGAAGUGu-----GgCGCUCCa-UCCGCGGAu -5'
23816 3' -57.1 NC_005261.1 + 76653 0.73 0.45818
Target:  5'- ----aGCGCCuGCGAGGUcGGCGCCg- -3'
miRNA:   3'- agaagUGUGG-CGCUCCAuCCGCGGau -5'
23816 3' -57.1 NC_005261.1 + 85373 0.72 0.474163
Target:  5'- -gUUCGCGCCGCcgcccucgggcuucuGGUAGGCGCCc- -3'
miRNA:   3'- agAAGUGUGGCGcu-------------CCAUCCGCGGau -5'
23816 3' -57.1 NC_005261.1 + 125532 0.72 0.477012
Target:  5'- --cUCGCGCCGCccgcAGGgcGGCGCCa- -3'
miRNA:   3'- agaAGUGUGGCGc---UCCauCCGCGGau -5'
23816 3' -57.1 NC_005261.1 + 25270 0.7 0.576064
Target:  5'- aUUUUUuCGCCGCGAGG-GGGCGCg-- -3'
miRNA:   3'- -AGAAGuGUGGCGCUCCaUCCGCGgau -5'
23816 3' -57.1 NC_005261.1 + 49269 0.7 0.596554
Target:  5'- gCgcgCACGuCCGCGAGGaAGGCGCa-- -3'
miRNA:   3'- aGaa-GUGU-GGCGCUCCaUCCGCGgau -5'
23816 3' -57.1 NC_005261.1 + 43795 0.7 0.606842
Target:  5'- ----gGCGCCGCG-GGUgaggGGGCGCCg- -3'
miRNA:   3'- agaagUGUGGCGCuCCA----UCCGCGGau -5'
23816 3' -57.1 NC_005261.1 + 28757 0.7 0.606842
Target:  5'- ----gACGCCGCGGccGG-GGGCGCCUGg -3'
miRNA:   3'- agaagUGUGGCGCU--CCaUCCGCGGAU- -5'
23816 3' -57.1 NC_005261.1 + 83689 0.7 0.617149
Target:  5'- ---gCGCGCCGcCGAGGc-GGCGCCg- -3'
miRNA:   3'- agaaGUGUGGC-GCUCCauCCGCGGau -5'
23816 3' -57.1 NC_005261.1 + 134356 0.7 0.617149
Target:  5'- ---cCGCGCCGCcgcgcgGGGGgcGGCGCCg- -3'
miRNA:   3'- agaaGUGUGGCG------CUCCauCCGCGGau -5'
23816 3' -57.1 NC_005261.1 + 44855 0.7 0.627469
Target:  5'- ---cCGCAgCCGCGAGGaAGaGCGCCg- -3'
miRNA:   3'- agaaGUGU-GGCGCUCCaUC-CGCGGau -5'
23816 3' -57.1 NC_005261.1 + 132886 0.7 0.627469
Target:  5'- uUCUUCggcaagccggGCGCCGCGGGc--GGCGCCg- -3'
miRNA:   3'- -AGAAG----------UGUGGCGCUCcauCCGCGGau -5'
23816 3' -57.1 NC_005261.1 + 129612 0.69 0.637791
Target:  5'- aUUUCGCG--GCGGGGUcGGGCGCCUu -3'
miRNA:   3'- aGAAGUGUggCGCUCCA-UCCGCGGAu -5'
23816 3' -57.1 NC_005261.1 + 80097 0.69 0.637791
Target:  5'- gCgcgCGCGCCGCGGuaccGGcuUGGGCGCCg- -3'
miRNA:   3'- aGaa-GUGUGGCGCU----CC--AUCCGCGGau -5'
23816 3' -57.1 NC_005261.1 + 5484 0.69 0.668699
Target:  5'- aUCgcgCGCGCCGgGGGGUAgcuGGgGCCg- -3'
miRNA:   3'- -AGaa-GUGUGGCgCUCCAU---CCgCGGau -5'
23816 3' -57.1 NC_005261.1 + 71383 0.69 0.668699
Target:  5'- ---cCGCGCCGCGAcccgguacgcguGGUAGGCGgCg- -3'
miRNA:   3'- agaaGUGUGGCGCU------------CCAUCCGCgGau -5'
23816 3' -57.1 NC_005261.1 + 90238 0.69 0.678952
Target:  5'- gCgggCGCGCCGUcGGGUaucaGGGCGCCa- -3'
miRNA:   3'- aGaa-GUGUGGCGcUCCA----UCCGCGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.