miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23816 3' -57.1 NC_005261.1 + 1871 0.68 0.729451
Target:  5'- ---aCGCGCCGCGAGGccagcacGGCGCg-- -3'
miRNA:   3'- agaaGUGUGGCGCUCCau-----CCGCGgau -5'
23816 3' -57.1 NC_005261.1 + 4530 0.66 0.814164
Target:  5'- ----gGCGCCGCGGcGaGGGCGCCg- -3'
miRNA:   3'- agaagUGUGGCGCUcCaUCCGCGGau -5'
23816 3' -57.1 NC_005261.1 + 4945 0.66 0.847836
Target:  5'- ---cCGCGCCGCGGcccAGGCGCCc- -3'
miRNA:   3'- agaaGUGUGGCGCUccaUCCGCGGau -5'
23816 3' -57.1 NC_005261.1 + 5484 0.69 0.668699
Target:  5'- aUCgcgCGCGCCGgGGGGUAgcuGGgGCCg- -3'
miRNA:   3'- -AGaa-GUGUGGCgCUCCAU---CCgCGGau -5'
23816 3' -57.1 NC_005261.1 + 10250 0.68 0.699333
Target:  5'- --cUCGcCGCCGCGGGccuGGCGCCUu -3'
miRNA:   3'- agaAGU-GUGGCGCUCcauCCGCGGAu -5'
23816 3' -57.1 NC_005261.1 + 12563 0.68 0.728458
Target:  5'- ---cCGCGCCgggcaacGCGGGGccgagagGGGCGCCUAg -3'
miRNA:   3'- agaaGUGUGG-------CGCUCCa------UCCGCGGAU- -5'
23816 3' -57.1 NC_005261.1 + 13427 0.66 0.805306
Target:  5'- ---gCGCACCGCGcgucgaccGGGUGcaggcaggccGGCGCCUc -3'
miRNA:   3'- agaaGUGUGGCGC--------UCCAU----------CCGCGGAu -5'
23816 3' -57.1 NC_005261.1 + 13663 0.68 0.729451
Target:  5'- ---cCGcCGCCGCGGGGgGGGCGCg-- -3'
miRNA:   3'- agaaGU-GUGGCGCUCCaUCCGCGgau -5'
23816 3' -57.1 NC_005261.1 + 14685 0.73 0.439752
Target:  5'- uUCUUCGCugauggUgGCGAGGggGGGCGCCUu -3'
miRNA:   3'- -AGAAGUGu-----GgCGCUCCa-UCCGCGGAu -5'
23816 3' -57.1 NC_005261.1 + 15141 0.66 0.822855
Target:  5'- cCUUCGCccccGCCGUccgcggugGGGGUGGGCGUa-- -3'
miRNA:   3'- aGAAGUG----UGGCG--------CUCCAUCCGCGgau -5'
23816 3' -57.1 NC_005261.1 + 16277 0.67 0.787119
Target:  5'- gCUUCGgcuCGCC-CGGGG-GGGCGCCg- -3'
miRNA:   3'- aGAAGU---GUGGcGCUCCaUCCGCGGau -5'
23816 3' -57.1 NC_005261.1 + 19231 0.66 0.822855
Target:  5'- gUCcUCACcCCGCGAGacugcggGGGCGCUg- -3'
miRNA:   3'- -AGaAGUGuGGCGCUCca-----UCCGCGGau -5'
23816 3' -57.1 NC_005261.1 + 25270 0.7 0.576064
Target:  5'- aUUUUUuCGCCGCGAGG-GGGCGCg-- -3'
miRNA:   3'- -AGAAGuGUGGCGCUCCaUCCGCGgau -5'
23816 3' -57.1 NC_005261.1 + 28092 0.67 0.748143
Target:  5'- cUCgUCGCGCCGCagcaaagggguuaGAGGgGGGgGCCUc -3'
miRNA:   3'- -AGaAGUGUGGCG-------------CUCCaUCCgCGGAu -5'
23816 3' -57.1 NC_005261.1 + 28757 0.7 0.606842
Target:  5'- ----gACGCCGCGGccGG-GGGCGCCUGg -3'
miRNA:   3'- agaagUGUGGCGCU--CCaUCCGCGGAU- -5'
23816 3' -57.1 NC_005261.1 + 29616 0.68 0.729451
Target:  5'- -gUUCAuCACCGgGAGcGUGacGGCGCCg- -3'
miRNA:   3'- agAAGU-GUGGCgCUC-CAU--CCGCGGau -5'
23816 3' -57.1 NC_005261.1 + 32277 0.66 0.814164
Target:  5'- ----gGCGCCGCcgcuggugcugGAGGcGGGCGCCg- -3'
miRNA:   3'- agaagUGUGGCG-----------CUCCaUCCGCGGau -5'
23816 3' -57.1 NC_005261.1 + 35852 0.69 0.689167
Target:  5'- gCggCGCACCGaaaugGAGGUGGcCGCCUGg -3'
miRNA:   3'- aGaaGUGUGGCg----CUCCAUCcGCGGAU- -5'
23816 3' -57.1 NC_005261.1 + 41445 0.66 0.805306
Target:  5'- aCUUCGCAgUGCGGuGGacuGGCGuCCUGg -3'
miRNA:   3'- aGAAGUGUgGCGCU-CCau-CCGC-GGAU- -5'
23816 3' -57.1 NC_005261.1 + 43795 0.7 0.606842
Target:  5'- ----gGCGCCGCG-GGUgaggGGGCGCCg- -3'
miRNA:   3'- agaagUGUGGCGCuCCA----UCCGCGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.