miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23816 3' -57.1 NC_005261.1 + 44855 0.7 0.627469
Target:  5'- ---cCGCAgCCGCGAGGaAGaGCGCCg- -3'
miRNA:   3'- agaaGUGU-GGCGCUCCaUC-CGCGGau -5'
23816 3' -57.1 NC_005261.1 + 49269 0.7 0.596554
Target:  5'- gCgcgCACGuCCGCGAGGaAGGCGCa-- -3'
miRNA:   3'- aGaa-GUGU-GGCGCUCCaUCCGCGgau -5'
23816 3' -57.1 NC_005261.1 + 49452 0.67 0.768364
Target:  5'- cCgcgCGCGCCGCGgaAGGcGGGCGCg-- -3'
miRNA:   3'- aGaa-GUGUGGCGC--UCCaUCCGCGgau -5'
23816 3' -57.1 NC_005261.1 + 50631 0.66 0.805306
Target:  5'- gCUcCACGCgggcgGCGGGGU-GGCGCCg- -3'
miRNA:   3'- aGAaGUGUGg----CGCUCCAuCCGCGGau -5'
23816 3' -57.1 NC_005261.1 + 50832 0.79 0.205075
Target:  5'- gCUUgGCGCCGCGAGcu-GGCGCCUGu -3'
miRNA:   3'- aGAAgUGUGGCGCUCcauCCGCGGAU- -5'
23816 3' -57.1 NC_005261.1 + 52965 0.68 0.709442
Target:  5'- ----aGCGCCGCGccGGUGcGGCGCCg- -3'
miRNA:   3'- agaagUGUGGCGCu-CCAU-CCGCGGau -5'
23816 3' -57.1 NC_005261.1 + 53548 0.67 0.768364
Target:  5'- cUCUUCggccGCGCCGCGGcccAGGCGCaCUAg -3'
miRNA:   3'- -AGAAG----UGUGGCGCUccaUCCGCG-GAU- -5'
23816 3' -57.1 NC_005261.1 + 55277 0.68 0.739331
Target:  5'- cCUggCGCGCCG-GAGGcggGGGCGCUg- -3'
miRNA:   3'- aGAa-GUGUGGCgCUCCa--UCCGCGGau -5'
23816 3' -57.1 NC_005261.1 + 58156 0.66 0.839698
Target:  5'- aUCUUCACGCgCGagucgcugcgcaCGAGGUgcAGGCaGCCc- -3'
miRNA:   3'- -AGAAGUGUG-GC------------GCUCCA--UCCG-CGGau -5'
23816 3' -57.1 NC_005261.1 + 68076 0.66 0.814164
Target:  5'- gUCUcggUCGC-CCGCGGGGgcgGGGagGCCg- -3'
miRNA:   3'- -AGA---AGUGuGGCGCUCCa--UCCg-CGGau -5'
23816 3' -57.1 NC_005261.1 + 70641 0.66 0.847836
Target:  5'- ----aGCGCCGCggcgcuGAGGUucGGCGCCg- -3'
miRNA:   3'- agaagUGUGGCG------CUCCAu-CCGCGGau -5'
23816 3' -57.1 NC_005261.1 + 71383 0.69 0.668699
Target:  5'- ---cCGCGCCGCGAcccgguacgcguGGUAGGCGgCg- -3'
miRNA:   3'- agaaGUGUGGCGCU------------CCAUCCGCgGau -5'
23816 3' -57.1 NC_005261.1 + 74506 0.68 0.719485
Target:  5'- cUCUUCgggGCGgCGcCGGGGccauggcgcuUGGGCGCCUAg -3'
miRNA:   3'- -AGAAG---UGUgGC-GCUCC----------AUCCGCGGAU- -5'
23816 3' -57.1 NC_005261.1 + 75201 0.67 0.796288
Target:  5'- cCUUCAUggcgGCCGCGGuGgcGGCGCUg- -3'
miRNA:   3'- aGAAGUG----UGGCGCUcCauCCGCGGau -5'
23816 3' -57.1 NC_005261.1 + 76653 0.73 0.45818
Target:  5'- ----aGCGCCuGCGAGGUcGGCGCCg- -3'
miRNA:   3'- agaagUGUGG-CGCUCCAuCCGCGGau -5'
23816 3' -57.1 NC_005261.1 + 80097 0.69 0.637791
Target:  5'- gCgcgCGCGCCGCGGuaccGGcuUGGGCGCCg- -3'
miRNA:   3'- aGaa-GUGUGGCGCU----CC--AUCCGCGGau -5'
23816 3' -57.1 NC_005261.1 + 83689 0.7 0.617149
Target:  5'- ---gCGCGCCGcCGAGGc-GGCGCCg- -3'
miRNA:   3'- agaaGUGUGGC-GCUCCauCCGCGGau -5'
23816 3' -57.1 NC_005261.1 + 85373 0.72 0.474163
Target:  5'- -gUUCGCGCCGCcgcccucgggcuucuGGUAGGCGCCc- -3'
miRNA:   3'- agAAGUGUGGCGcu-------------CCAUCCGCGGau -5'
23816 3' -57.1 NC_005261.1 + 85557 0.8 0.176296
Target:  5'- gUCUgcgGCGCCGCGAGGUucGGCGCCg- -3'
miRNA:   3'- -AGAag-UGUGGCGCUCCAu-CCGCGGau -5'
23816 3' -57.1 NC_005261.1 + 88136 0.74 0.37053
Target:  5'- uUCcUCGCGCCGCGcGG-GGGCGCCc- -3'
miRNA:   3'- -AGaAGUGUGGCGCuCCaUCCGCGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.