miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23816 3' -57.1 NC_005261.1 + 53548 0.67 0.768364
Target:  5'- cUCUUCggccGCGCCGCGGcccAGGCGCaCUAg -3'
miRNA:   3'- -AGAAG----UGUGGCGCUccaUCCGCG-GAU- -5'
23816 3' -57.1 NC_005261.1 + 49452 0.67 0.768364
Target:  5'- cCgcgCGCGCCGCGgaAGGcGGGCGCg-- -3'
miRNA:   3'- aGaa-GUGUGGCGC--UCCaUCCGCGgau -5'
23816 3' -57.1 NC_005261.1 + 94271 0.67 0.768364
Target:  5'- ----gGCGCCGCGAGGcucuuGGCGCa-- -3'
miRNA:   3'- agaagUGUGGCGCUCCau---CCGCGgau -5'
23816 3' -57.1 NC_005261.1 + 109328 0.67 0.749116
Target:  5'- gCgagCGCgGCCGCGGGGUcGGCgGCCg- -3'
miRNA:   3'- aGaa-GUG-UGGCGCUCCAuCCG-CGGau -5'
23816 3' -57.1 NC_005261.1 + 132545 0.67 0.749116
Target:  5'- --cUCGCG-CGCGAGGgcgAGGCGCa-- -3'
miRNA:   3'- agaAGUGUgGCGCUCCa--UCCGCGgau -5'
23816 3' -57.1 NC_005261.1 + 28092 0.67 0.748143
Target:  5'- cUCgUCGCGCCGCagcaaagggguuaGAGGgGGGgGCCUc -3'
miRNA:   3'- -AGaAGUGUGGCG-------------CUCCaUCCgCGGAu -5'
23816 3' -57.1 NC_005261.1 + 55277 0.68 0.739331
Target:  5'- cCUggCGCGCCG-GAGGcggGGGCGCUg- -3'
miRNA:   3'- aGAa-GUGUGGCgCUCCa--UCCGCGGau -5'
23816 3' -57.1 NC_005261.1 + 29616 0.68 0.729451
Target:  5'- -gUUCAuCACCGgGAGcGUGacGGCGCCg- -3'
miRNA:   3'- agAAGU-GUGGCgCUC-CAU--CCGCGGau -5'
23816 3' -57.1 NC_005261.1 + 1871 0.68 0.729451
Target:  5'- ---aCGCGCCGCGAGGccagcacGGCGCg-- -3'
miRNA:   3'- agaaGUGUGGCGCUCCau-----CCGCGgau -5'
23816 3' -57.1 NC_005261.1 + 13663 0.68 0.729451
Target:  5'- ---cCGcCGCCGCGGGGgGGGCGCg-- -3'
miRNA:   3'- agaaGU-GUGGCGCUCCaUCCGCGgau -5'
23816 3' -57.1 NC_005261.1 + 12563 0.68 0.728458
Target:  5'- ---cCGCGCCgggcaacGCGGGGccgagagGGGCGCCUAg -3'
miRNA:   3'- agaaGUGUGG-------CGCUCCa------UCCGCGGAU- -5'
23816 3' -57.1 NC_005261.1 + 74506 0.68 0.719485
Target:  5'- cUCUUCgggGCGgCGcCGGGGccauggcgcuUGGGCGCCUAg -3'
miRNA:   3'- -AGAAG---UGUgGC-GCUCC----------AUCCGCGGAU- -5'
23816 3' -57.1 NC_005261.1 + 119903 0.68 0.709442
Target:  5'- --cUgGCGCCGCGAcGcGGGCGCCa- -3'
miRNA:   3'- agaAgUGUGGCGCUcCaUCCGCGGau -5'
23816 3' -57.1 NC_005261.1 + 52965 0.68 0.709442
Target:  5'- ----aGCGCCGCGccGGUGcGGCGCCg- -3'
miRNA:   3'- agaagUGUGGCGCu-CCAU-CCGCGGau -5'
23816 3' -57.1 NC_005261.1 + 10250 0.68 0.699333
Target:  5'- --cUCGcCGCCGCGGGccuGGCGCCUu -3'
miRNA:   3'- agaAGU-GUGGCGCUCcauCCGCGGAu -5'
23816 3' -57.1 NC_005261.1 + 35852 0.69 0.689167
Target:  5'- gCggCGCACCGaaaugGAGGUGGcCGCCUGg -3'
miRNA:   3'- aGaaGUGUGGCg----CUCCAUCcGCGGAU- -5'
23816 3' -57.1 NC_005261.1 + 90238 0.69 0.678952
Target:  5'- gCgggCGCGCCGUcGGGUaucaGGGCGCCa- -3'
miRNA:   3'- aGaa-GUGUGGCGcUCCA----UCCGCGGau -5'
23816 3' -57.1 NC_005261.1 + 71383 0.69 0.668699
Target:  5'- ---cCGCGCCGCGAcccgguacgcguGGUAGGCGgCg- -3'
miRNA:   3'- agaaGUGUGGCGCU------------CCAUCCGCgGau -5'
23816 3' -57.1 NC_005261.1 + 5484 0.69 0.668699
Target:  5'- aUCgcgCGCGCCGgGGGGUAgcuGGgGCCg- -3'
miRNA:   3'- -AGaa-GUGUGGCgCUCCAU---CCgCGGau -5'
23816 3' -57.1 NC_005261.1 + 80097 0.69 0.637791
Target:  5'- gCgcgCGCGCCGCGGuaccGGcuUGGGCGCCg- -3'
miRNA:   3'- aGaa-GUGUGGCGCU----CC--AUCCGCGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.