Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23816 | 3' | -57.1 | NC_005261.1 | + | 94271 | 0.67 | 0.768364 |
Target: 5'- ----gGCGCCGCGAGGcucuuGGCGCa-- -3' miRNA: 3'- agaagUGUGGCGCUCCau---CCGCGgau -5' |
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23816 | 3' | -57.1 | NC_005261.1 | + | 53548 | 0.67 | 0.768364 |
Target: 5'- cUCUUCggccGCGCCGCGGcccAGGCGCaCUAg -3' miRNA: 3'- -AGAAG----UGUGGCGCUccaUCCGCG-GAU- -5' |
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23816 | 3' | -57.1 | NC_005261.1 | + | 49452 | 0.67 | 0.768364 |
Target: 5'- cCgcgCGCGCCGCGgaAGGcGGGCGCg-- -3' miRNA: 3'- aGaa-GUGUGGCGC--UCCaUCCGCGgau -5' |
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23816 | 3' | -57.1 | NC_005261.1 | + | 132545 | 0.67 | 0.749116 |
Target: 5'- --cUCGCG-CGCGAGGgcgAGGCGCa-- -3' miRNA: 3'- agaAGUGUgGCGCUCCa--UCCGCGgau -5' |
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23816 | 3' | -57.1 | NC_005261.1 | + | 109328 | 0.67 | 0.749116 |
Target: 5'- gCgagCGCgGCCGCGGGGUcGGCgGCCg- -3' miRNA: 3'- aGaa-GUG-UGGCGCUCCAuCCG-CGGau -5' |
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23816 | 3' | -57.1 | NC_005261.1 | + | 28092 | 0.67 | 0.748143 |
Target: 5'- cUCgUCGCGCCGCagcaaagggguuaGAGGgGGGgGCCUc -3' miRNA: 3'- -AGaAGUGUGGCG-------------CUCCaUCCgCGGAu -5' |
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23816 | 3' | -57.1 | NC_005261.1 | + | 55277 | 0.68 | 0.739331 |
Target: 5'- cCUggCGCGCCG-GAGGcggGGGCGCUg- -3' miRNA: 3'- aGAa-GUGUGGCgCUCCa--UCCGCGGau -5' |
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23816 | 3' | -57.1 | NC_005261.1 | + | 13663 | 0.68 | 0.729451 |
Target: 5'- ---cCGcCGCCGCGGGGgGGGCGCg-- -3' miRNA: 3'- agaaGU-GUGGCGCUCCaUCCGCGgau -5' |
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23816 | 3' | -57.1 | NC_005261.1 | + | 1871 | 0.68 | 0.729451 |
Target: 5'- ---aCGCGCCGCGAGGccagcacGGCGCg-- -3' miRNA: 3'- agaaGUGUGGCGCUCCau-----CCGCGgau -5' |
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23816 | 3' | -57.1 | NC_005261.1 | + | 29616 | 0.68 | 0.729451 |
Target: 5'- -gUUCAuCACCGgGAGcGUGacGGCGCCg- -3' miRNA: 3'- agAAGU-GUGGCgCUC-CAU--CCGCGGau -5' |
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23816 | 3' | -57.1 | NC_005261.1 | + | 12563 | 0.68 | 0.728458 |
Target: 5'- ---cCGCGCCgggcaacGCGGGGccgagagGGGCGCCUAg -3' miRNA: 3'- agaaGUGUGG-------CGCUCCa------UCCGCGGAU- -5' |
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23816 | 3' | -57.1 | NC_005261.1 | + | 74506 | 0.68 | 0.719485 |
Target: 5'- cUCUUCgggGCGgCGcCGGGGccauggcgcuUGGGCGCCUAg -3' miRNA: 3'- -AGAAG---UGUgGC-GCUCC----------AUCCGCGGAU- -5' |
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23816 | 3' | -57.1 | NC_005261.1 | + | 119903 | 0.68 | 0.709442 |
Target: 5'- --cUgGCGCCGCGAcGcGGGCGCCa- -3' miRNA: 3'- agaAgUGUGGCGCUcCaUCCGCGGau -5' |
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23816 | 3' | -57.1 | NC_005261.1 | + | 52965 | 0.68 | 0.709442 |
Target: 5'- ----aGCGCCGCGccGGUGcGGCGCCg- -3' miRNA: 3'- agaagUGUGGCGCu-CCAU-CCGCGGau -5' |
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23816 | 3' | -57.1 | NC_005261.1 | + | 10250 | 0.68 | 0.699333 |
Target: 5'- --cUCGcCGCCGCGGGccuGGCGCCUu -3' miRNA: 3'- agaAGU-GUGGCGCUCcauCCGCGGAu -5' |
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23816 | 3' | -57.1 | NC_005261.1 | + | 35852 | 0.69 | 0.689167 |
Target: 5'- gCggCGCACCGaaaugGAGGUGGcCGCCUGg -3' miRNA: 3'- aGaaGUGUGGCg----CUCCAUCcGCGGAU- -5' |
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23816 | 3' | -57.1 | NC_005261.1 | + | 90238 | 0.69 | 0.678952 |
Target: 5'- gCgggCGCGCCGUcGGGUaucaGGGCGCCa- -3' miRNA: 3'- aGaa-GUGUGGCGcUCCA----UCCGCGGau -5' |
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23816 | 3' | -57.1 | NC_005261.1 | + | 71383 | 0.69 | 0.668699 |
Target: 5'- ---cCGCGCCGCGAcccgguacgcguGGUAGGCGgCg- -3' miRNA: 3'- agaaGUGUGGCGCU------------CCAUCCGCgGau -5' |
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23816 | 3' | -57.1 | NC_005261.1 | + | 5484 | 0.69 | 0.668699 |
Target: 5'- aUCgcgCGCGCCGgGGGGUAgcuGGgGCCg- -3' miRNA: 3'- -AGaa-GUGUGGCgCUCCAU---CCgCGGau -5' |
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23816 | 3' | -57.1 | NC_005261.1 | + | 80097 | 0.69 | 0.637791 |
Target: 5'- gCgcgCGCGCCGCGGuaccGGcuUGGGCGCCg- -3' miRNA: 3'- aGaa-GUGUGGCGCU----CC--AUCCGCGGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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