miRNA display CGI


Results 41 - 60 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23818 5' -52.6 NC_005261.1 + 110903 0.67 0.956668
Target:  5'- gGCGACUGCGAcgcgacgguGUUCCugccGCGCUggGCa -3'
miRNA:   3'- -CGUUGAUGCU---------CAAGGu---CGCGGgaUGc -5'
23818 5' -52.6 NC_005261.1 + 102248 0.67 0.956668
Target:  5'- cGCccGCUGCGcGcucgccUCCAGCGCCCgguCGg -3'
miRNA:   3'- -CGu-UGAUGCuCa-----AGGUCGCGGGau-GC- -5'
23818 5' -52.6 NC_005261.1 + 105157 0.67 0.956668
Target:  5'- cGCGGCU-CGAGgg-CGGCGUCC-ACGg -3'
miRNA:   3'- -CGUUGAuGCUCaagGUCGCGGGaUGC- -5'
23818 5' -52.6 NC_005261.1 + 11928 0.67 0.952666
Target:  5'- gGCGGCUGCGGcggCCcGCGCCgCgGCGg -3'
miRNA:   3'- -CGUUGAUGCUcaaGGuCGCGG-GaUGC- -5'
23818 5' -52.6 NC_005261.1 + 83081 0.67 0.952666
Target:  5'- gGCGGCcgGCGc-UUCCAGCGCCUccaGCGc -3'
miRNA:   3'- -CGUUGa-UGCucAAGGUCGCGGGa--UGC- -5'
23818 5' -52.6 NC_005261.1 + 28289 0.67 0.952666
Target:  5'- cGCGGCcGCGGucgucuccuucGUUCgCGGCGCCC-GCGc -3'
miRNA:   3'- -CGUUGaUGCU-----------CAAG-GUCGCGGGaUGC- -5'
23818 5' -52.6 NC_005261.1 + 1411 0.67 0.952666
Target:  5'- cGCGGCggcgGCGGGgg-CGGCGCCCg--- -3'
miRNA:   3'- -CGUUGa---UGCUCaagGUCGCGGGaugc -5'
23818 5' -52.6 NC_005261.1 + 4930 0.68 0.943934
Target:  5'- cGCGGCcGCGAGcgCCcGCGCC--GCGg -3'
miRNA:   3'- -CGUUGaUGCUCaaGGuCGCGGgaUGC- -5'
23818 5' -52.6 NC_005261.1 + 131184 0.68 0.943934
Target:  5'- aGCGGCUACGcccgcggcgcGGUcgccgCCGGCGCgCCcGCGu -3'
miRNA:   3'- -CGUUGAUGC----------UCAa----GGUCGCG-GGaUGC- -5'
23818 5' -52.6 NC_005261.1 + 110098 0.68 0.939198
Target:  5'- cGCAACU-CGAGcgCCccggcGCGCCCguccugACGc -3'
miRNA:   3'- -CGUUGAuGCUCaaGGu----CGCGGGa-----UGC- -5'
23818 5' -52.6 NC_005261.1 + 131664 0.68 0.939198
Target:  5'- cGCAccguCUGCGAGggugCgAcCGCCCUGCGc -3'
miRNA:   3'- -CGUu---GAUGCUCaa--GgUcGCGGGAUGC- -5'
23818 5' -52.6 NC_005261.1 + 104548 0.68 0.928976
Target:  5'- cGCAGCUugGcGUccgCCAGguCGCCCaGCGc -3'
miRNA:   3'- -CGUUGAugCuCAa--GGUC--GCGGGaUGC- -5'
23818 5' -52.6 NC_005261.1 + 134078 0.68 0.928976
Target:  5'- cGCGGCUcauguGCGAGcUCuCGGCGCgCCgGCGc -3'
miRNA:   3'- -CGUUGA-----UGCUCaAG-GUCGCG-GGaUGC- -5'
23818 5' -52.6 NC_005261.1 + 72468 0.69 0.917748
Target:  5'- cGCGGCgagcGCGAGcgcggCCAGCGCCaggaGCGc -3'
miRNA:   3'- -CGUUGa---UGCUCaa---GGUCGCGGga--UGC- -5'
23818 5' -52.6 NC_005261.1 + 121077 0.69 0.917748
Target:  5'- cGCGGCgccgGCGGccgCCAGCGCCUccaggccgUGCGg -3'
miRNA:   3'- -CGUUGa---UGCUcaaGGUCGCGGG--------AUGC- -5'
23818 5' -52.6 NC_005261.1 + 122634 0.69 0.911757
Target:  5'- gGCGAgcGCGAGgcCCGGCGCgCgUACGu -3'
miRNA:   3'- -CGUUgaUGCUCaaGGUCGCG-GgAUGC- -5'
23818 5' -52.6 NC_005261.1 + 85560 0.69 0.911757
Target:  5'- uGCGGCgccGCGAGgUUCGGCGCCgCgaccGCGg -3'
miRNA:   3'- -CGUUGa--UGCUCaAGGUCGCGG-Ga---UGC- -5'
23818 5' -52.6 NC_005261.1 + 70915 0.69 0.911757
Target:  5'- cGCcACgucccgcGCGAGcUCCAGCG-CCUGCGc -3'
miRNA:   3'- -CGuUGa------UGCUCaAGGUCGCgGGAUGC- -5'
23818 5' -52.6 NC_005261.1 + 53981 0.69 0.911757
Target:  5'- -gAGCgcgGCGAGcUCCAGCGCgCgGCGc -3'
miRNA:   3'- cgUUGa--UGCUCaAGGUCGCGgGaUGC- -5'
23818 5' -52.6 NC_005261.1 + 5546 0.69 0.911757
Target:  5'- cGCAGCgagACGGGg---GGCGCCCgagcgGCGg -3'
miRNA:   3'- -CGUUGa--UGCUCaaggUCGCGGGa----UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.