miRNA display CGI


Results 21 - 40 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23819 5' -65.3 NC_005261.1 + 78078 0.66 0.455841
Target:  5'- --gGCCCAgGCGCuggCCCCCgCGCcgGCc -3'
miRNA:   3'- augCGGGUgCGCG---GGGGGaGCGa-CGa -5'
23819 5' -65.3 NC_005261.1 + 62221 0.66 0.455841
Target:  5'- cGCGgCCGCgucuGCGCCCUCgCggUGCUGCa -3'
miRNA:   3'- aUGCgGGUG----CGCGGGGG-Ga-GCGACGa -5'
23819 5' -65.3 NC_005261.1 + 102896 0.66 0.455841
Target:  5'- --aGCCC-CGCGCCCCuggCC-CGCaGCg -3'
miRNA:   3'- augCGGGuGCGCGGGG---GGaGCGaCGa -5'
23819 5' -65.3 NC_005261.1 + 117403 0.66 0.452318
Target:  5'- gGCGCCCGacuuucggcuggaGCuggaGUCCCCCUCgggguuccggcgGCUGCUg -3'
miRNA:   3'- aUGCGGGUg------------CG----CGGGGGGAG------------CGACGA- -5'
23819 5' -65.3 NC_005261.1 + 4291 0.66 0.44706
Target:  5'- cACGgCCGCGgGCCCCgCggcCGCcGCg -3'
miRNA:   3'- aUGCgGGUGCgCGGGGgGa--GCGaCGa -5'
23819 5' -65.3 NC_005261.1 + 50485 0.66 0.44706
Target:  5'- cGCGUCCGCgGCGgCCCCCagCGCcucGCc -3'
miRNA:   3'- aUGCGGGUG-CGCgGGGGGa-GCGa--CGa -5'
23819 5' -65.3 NC_005261.1 + 70937 0.66 0.44706
Target:  5'- aGCGCCUGCGCGUCCgCCgggaacgccgaCGCcGCg -3'
miRNA:   3'- aUGCGGGUGCGCGGGgGGa----------GCGaCGa -5'
23819 5' -65.3 NC_005261.1 + 133896 0.66 0.44706
Target:  5'- --aGCCCGCgGCGCgCUgcuggCCUgGCUGCUg -3'
miRNA:   3'- augCGGGUG-CGCGgGG-----GGAgCGACGA- -5'
23819 5' -65.3 NC_005261.1 + 126072 0.66 0.444444
Target:  5'- -cCGCCCgccggccucggcggGCGCGCCCaUCUUCGC-GCg -3'
miRNA:   3'- auGCGGG--------------UGCGCGGG-GGGAGCGaCGa -5'
23819 5' -65.3 NC_005261.1 + 117577 0.66 0.438374
Target:  5'- -cCGCCC-CGCGCCCgCC--GCUGUc -3'
miRNA:   3'- auGCGGGuGCGCGGGgGGagCGACGa -5'
23819 5' -65.3 NC_005261.1 + 118864 0.66 0.438374
Target:  5'- cGCGCCCGCG-GCCCUggCCUCgGCcaccGCg -3'
miRNA:   3'- aUGCGGGUGCgCGGGG--GGAG-CGa---CGa -5'
23819 5' -65.3 NC_005261.1 + 95198 0.66 0.438374
Target:  5'- cUGgGaCCCGCGcCGCCCgCCCgcgCGgUGCg -3'
miRNA:   3'- -AUgC-GGGUGC-GCGGG-GGGa--GCgACGa -5'
23819 5' -65.3 NC_005261.1 + 135617 0.66 0.438374
Target:  5'- cUGCgGCUgaagCugGCGCCCUUCaugCGCUGCUa -3'
miRNA:   3'- -AUG-CGG----GugCGCGGGGGGa--GCGACGA- -5'
23819 5' -65.3 NC_005261.1 + 133591 0.66 0.438374
Target:  5'- cGCGCUgGCGCugcucacgGCCCaCCUCGCgcugGCg -3'
miRNA:   3'- aUGCGGgUGCG--------CGGGgGGAGCGa---CGa -5'
23819 5' -65.3 NC_005261.1 + 4590 0.66 0.438374
Target:  5'- gGCGCCCcccgGCGCcaggGCUCCCCUCG--GCg -3'
miRNA:   3'- aUGCGGG----UGCG----CGGGGGGAGCgaCGa -5'
23819 5' -65.3 NC_005261.1 + 50723 0.66 0.438374
Target:  5'- cGCGCCUcCuCGCCCUCgUCGCcGCa -3'
miRNA:   3'- aUGCGGGuGcGCGGGGGgAGCGaCGa -5'
23819 5' -65.3 NC_005261.1 + 103245 0.66 0.438374
Target:  5'- -cCGUCCGCGCGCCCgCgUcCGC-GCa -3'
miRNA:   3'- auGCGGGUGCGCGGGgGgA-GCGaCGa -5'
23819 5' -65.3 NC_005261.1 + 82248 0.66 0.435787
Target:  5'- gACGCUCACGCGCagggucuucuccagCUCCCgcCGCUGg- -3'
miRNA:   3'- aUGCGGGUGCGCG--------------GGGGGa-GCGACga -5'
23819 5' -65.3 NC_005261.1 + 31080 0.66 0.429785
Target:  5'- -cCGCCCGCGUGCUgggCCCCaUGCcGCc -3'
miRNA:   3'- auGCGGGUGCGCGG---GGGGaGCGaCGa -5'
23819 5' -65.3 NC_005261.1 + 75592 0.66 0.429785
Target:  5'- gGCGCUCGCGCGCgCCgCggaCGCggacgGCg -3'
miRNA:   3'- aUGCGGGUGCGCGgGGgGa--GCGa----CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.