miRNA display CGI


Results 21 - 40 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23819 5' -65.3 NC_005261.1 + 13046 0.67 0.404626
Target:  5'- gGCGCggggCCGCGCGCgCCCCU-GCcggGCg -3'
miRNA:   3'- aUGCG----GGUGCGCGgGGGGAgCGa--CGa -5'
23819 5' -65.3 NC_005261.1 + 15185 0.66 0.464714
Target:  5'- gGCGCCCGCGggaaaCGCCgCCaUCGC-GCg -3'
miRNA:   3'- aUGCGGGUGC-----GCGGgGGgAGCGaCGa -5'
23819 5' -65.3 NC_005261.1 + 15741 0.69 0.274522
Target:  5'- -cCGUCCGCGCGCaggccgaCCgCCUCGCcGCg -3'
miRNA:   3'- auGCGGGUGCGCGg------GG-GGAGCGaCGa -5'
23819 5' -65.3 NC_005261.1 + 16314 0.66 0.429785
Target:  5'- gGCGgCCGgGCcCuCCCCCUCGCcGCc -3'
miRNA:   3'- aUGCgGGUgCGcG-GGGGGAGCGaCGa -5'
23819 5' -65.3 NC_005261.1 + 19745 0.67 0.380417
Target:  5'- --aGCaCCACGCGCUCCCg-CGCggGCg -3'
miRNA:   3'- augCG-GGUGCGCGGGGGgaGCGa-CGa -5'
23819 5' -65.3 NC_005261.1 + 19919 0.67 0.404626
Target:  5'- -uCGCCCuCGCuCUCgCCCUCGCUaGCg -3'
miRNA:   3'- auGCGGGuGCGcGGG-GGGAGCGA-CGa -5'
23819 5' -65.3 NC_005261.1 + 20762 0.67 0.396449
Target:  5'- gGCGCCgccgacuugUACGCGCCCgUCUUCGC-GCa -3'
miRNA:   3'- aUGCGG---------GUGCGCGGG-GGGAGCGaCGa -5'
23819 5' -65.3 NC_005261.1 + 28163 0.81 0.044803
Target:  5'- -cCGCUCGgGCGCCCCCCgucUCGCUGCg -3'
miRNA:   3'- auGCGGGUgCGCGGGGGG---AGCGACGa -5'
23819 5' -65.3 NC_005261.1 + 28590 0.68 0.342275
Target:  5'- aGCGCCgGCGgGCCgCCCgCGCcgaGCUg -3'
miRNA:   3'- aUGCGGgUGCgCGGgGGGaGCGa--CGA- -5'
23819 5' -65.3 NC_005261.1 + 29505 0.68 0.32075
Target:  5'- cGCGCgCCGCGaCGCCauggCCUgGCUGCa -3'
miRNA:   3'- aUGCG-GGUGC-GCGGgg--GGAgCGACGa -5'
23819 5' -65.3 NC_005261.1 + 29821 0.7 0.250587
Target:  5'- gGCGCCCGCgccGCGCUCgCCgaGCUGCg -3'
miRNA:   3'- aUGCGGGUG---CGCGGGgGGagCGACGa -5'
23819 5' -65.3 NC_005261.1 + 30154 0.72 0.171633
Target:  5'- cGCGCCUuagcggcgcCGCGCCCgCCgCGCUGCg -3'
miRNA:   3'- aUGCGGGu--------GCGCGGGgGGaGCGACGa -5'
23819 5' -65.3 NC_005261.1 + 30272 0.75 0.109999
Target:  5'- gGCgGCCCGCGCGCCCgCCUggaCGCUGg- -3'
miRNA:   3'- aUG-CGGGUGCGCGGGgGGA---GCGACga -5'
23819 5' -65.3 NC_005261.1 + 31080 0.66 0.429785
Target:  5'- -cCGCCCGCGUGCUgggCCCCaUGCcGCc -3'
miRNA:   3'- auGCGGGUGCGCGG---GGGGaGCGaCGa -5'
23819 5' -65.3 NC_005261.1 + 31254 0.66 0.464714
Target:  5'- gGCGCCCG-GCGCUcgccuucgaCCCCgaggCGCUGg- -3'
miRNA:   3'- aUGCGGGUgCGCGG---------GGGGa---GCGACga -5'
23819 5' -65.3 NC_005261.1 + 31831 0.68 0.313115
Target:  5'- cGCGCUgGCGCGCgCCgugcuggCCUCGCgGCg -3'
miRNA:   3'- aUGCGGgUGCGCGgGG-------GGAGCGaCGa -5'
23819 5' -65.3 NC_005261.1 + 32589 0.69 0.280785
Target:  5'- cGCGUCCucCGCGUCCUCCUCGUcGUc -3'
miRNA:   3'- aUGCGGGu-GCGCGGGGGGAGCGaCGa -5'
23819 5' -65.3 NC_005261.1 + 32641 0.69 0.274522
Target:  5'- -uCGCCCugGagcggggccaGCCCCCCgCGCcGCUa -3'
miRNA:   3'- auGCGGGugCg---------CGGGGGGaGCGaCGA- -5'
23819 5' -65.3 NC_005261.1 + 34423 0.68 0.327811
Target:  5'- cGCGgCC-CGCGCCugCCCCU-GCUGCc -3'
miRNA:   3'- aUGCgGGuGCGCGG--GGGGAgCGACGa -5'
23819 5' -65.3 NC_005261.1 + 35438 0.68 0.313804
Target:  5'- aGCGCCCGCcCGCCCCgCgggucuaggCGCgGCg -3'
miRNA:   3'- aUGCGGGUGcGCGGGGgGa--------GCGaCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.