miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23819 5' -65.3 NC_005261.1 + 120 0.74 0.131025
Target:  5'- cGCGCCgGCGcCGCCCCUggugCUCGCgggGCUg -3'
miRNA:   3'- aUGCGGgUGC-GCGGGGG----GAGCGa--CGA- -5'
23819 5' -65.3 NC_005261.1 + 690 0.66 0.429785
Target:  5'- gACGCuCCGCaucgGCGCCCCCCUCc----- -3'
miRNA:   3'- aUGCG-GGUG----CGCGGGGGGAGcgacga -5'
23819 5' -65.3 NC_005261.1 + 798 0.67 0.404626
Target:  5'- -cCGCgCCGC-CGCCCCCCaCGC-GCg -3'
miRNA:   3'- auGCG-GGUGcGCGGGGGGaGCGaCGa -5'
23819 5' -65.3 NC_005261.1 + 1283 0.69 0.286519
Target:  5'- gGCGCCCAgGCcggcgggGCUCCCgUCGCcgGCg -3'
miRNA:   3'- aUGCGGGUgCG-------CGGGGGgAGCGa-CGa -5'
23819 5' -65.3 NC_005261.1 + 2406 0.72 0.171633
Target:  5'- cGCGCCCGCGgGCCCCg--CGCgGCg -3'
miRNA:   3'- aUGCGGGUGCgCGGGGggaGCGaCGa -5'
23819 5' -65.3 NC_005261.1 + 3749 0.7 0.262333
Target:  5'- gGCGCaCCGCGcCGCCUCuagcgCCUCGCgGCa -3'
miRNA:   3'- aUGCG-GGUGC-GCGGGG-----GGAGCGaCGa -5'
23819 5' -65.3 NC_005261.1 + 3804 0.66 0.455841
Target:  5'- --aGCUCGCGCaGCCgCUCgcgCGCUGCc -3'
miRNA:   3'- augCGGGUGCG-CGGgGGGa--GCGACGa -5'
23819 5' -65.3 NC_005261.1 + 4291 0.66 0.44706
Target:  5'- cACGgCCGCGgGCCCCgCggcCGCcGCg -3'
miRNA:   3'- aUGCgGGUGCgCGGGGgGa--GCGaCGa -5'
23819 5' -65.3 NC_005261.1 + 4590 0.66 0.438374
Target:  5'- gGCGCCCcccgGCGCcaggGCUCCCCUCG--GCg -3'
miRNA:   3'- aUGCGGG----UGCG----CGGGGGGAGCgaCGa -5'
23819 5' -65.3 NC_005261.1 + 4940 0.71 0.207895
Target:  5'- aGCGCCCGCGCcgcggcccagGCgCCCCCggcCGCgGCg -3'
miRNA:   3'- aUGCGGGUGCG----------CG-GGGGGa--GCGaCGa -5'
23819 5' -65.3 NC_005261.1 + 5141 0.67 0.396449
Target:  5'- gGCGCUCGCGCGCCUcggCCCg-GCggGCc -3'
miRNA:   3'- aUGCGGGUGCGCGGG---GGGagCGa-CGa -5'
23819 5' -65.3 NC_005261.1 + 5593 0.72 0.175836
Target:  5'- gGCGCCCGCcucgagGCcCCCCCCUCuaaccccuuuGCUGCg -3'
miRNA:   3'- aUGCGGGUG------CGcGGGGGGAG----------CGACGa -5'
23819 5' -65.3 NC_005261.1 + 6882 0.73 0.163494
Target:  5'- -cCGCCCAC-CGCCCCCCUCccagaGCagGCa -3'
miRNA:   3'- auGCGGGUGcGCGGGGGGAG-----CGa-CGa -5'
23819 5' -65.3 NC_005261.1 + 8424 0.74 0.127808
Target:  5'- gACGCUCACGgccacagacCGCgCCCCCUCGCgGCg -3'
miRNA:   3'- aUGCGGGUGC---------GCG-GGGGGAGCGaCGa -5'
23819 5' -65.3 NC_005261.1 + 10289 0.68 0.334986
Target:  5'- gGCGCCCcgACGCGCagCgCCUCGCcGUUg -3'
miRNA:   3'- aUGCGGG--UGCGCGg-GgGGAGCGaCGA- -5'
23819 5' -65.3 NC_005261.1 + 10535 0.66 0.464714
Target:  5'- cGCGCUCGCuGuCGCCCCCggcgCGcCUGCc -3'
miRNA:   3'- aUGCGGGUG-C-GCGGGGGga--GC-GACGa -5'
23819 5' -65.3 NC_005261.1 + 11217 0.67 0.404626
Target:  5'- aACG-CCGCGUgGCCCCCCgcgggCGC-GCUu -3'
miRNA:   3'- aUGCgGGUGCG-CGGGGGGa----GCGaCGA- -5'
23819 5' -65.3 NC_005261.1 + 11631 0.68 0.327811
Target:  5'- cGCcCCCACGCgGCgCCCCCUCGa-GCc -3'
miRNA:   3'- aUGcGGGUGCG-CG-GGGGGAGCgaCGa -5'
23819 5' -65.3 NC_005261.1 + 11901 0.66 0.429785
Target:  5'- cGCGCCCgccGCGgGCCCggCCCggccggCGgCUGCg -3'
miRNA:   3'- aUGCGGG---UGCgCGGG--GGGa-----GC-GACGa -5'
23819 5' -65.3 NC_005261.1 + 13013 0.67 0.396449
Target:  5'- --aGCCCgaGCGCGCCCCCCa-GCa--- -3'
miRNA:   3'- augCGGG--UGCGCGGGGGGagCGacga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.